CHD7 - chromodomain helicase DNA binding protein 7 Gene
Also Known as CRG; HH5; IS3; KAL5
Species: Homo sapiens
About CHD7
This gene has 19 transcripts (splice variants), 134 orthologues, 30 paralogues and is associated with 7 phenotypes. Ubiquitous expression in bone marrow (RPKM 6.4), brain (RPKM 4.0) and 25 other tissues.
Summary
This gene encodes a protein that contains several helicase family domains. Mutations in this gene have been found in some patients with the CHARGE syndrome. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2015]
CHD7 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001316690.1 | NP_001303619.1 | chromodomain-helicase-DNA-binding protein 7 isoform 2 |
| NM_017780.4 | NP_060250.2 | chromodomain-helicase-DNA-binding protein 7 isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
20130577 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in T cell differentiation |
IMP
IMP: Inferred from mutant phenotype
|
17684005 | GOA |
| involved in central nervous system development |
IMP
IMP: Inferred from mutant phenotype
|
9556299 | GOA |
| involved in cognition |
IMP
IMP: Inferred from mutant phenotype
|
16155193 | GOA |
| involved in cranial nerve development |
IMP
IMP: Inferred from mutant phenotype
|
9556299 | GOA |
| involved in face development |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in genitalia development |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in heart morphogenesis |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in in utero embryonic development |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in inner ear morphogenesis |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in limb development |
IMP
IMP: Inferred from mutant phenotype
|
17937444 | GOA |
| involved in nose development |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in regulation of growth hormone secretion |
IMP
IMP: Inferred from mutant phenotype
|
9556299 | GOA |
| involved in retina development in camera-type eye |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in secondary palate development |
IMP
IMP: Inferred from mutant phenotype
|
15300250 | GOA |
| involved in skeletal system development |
IMP
IMP: Inferred from mutant phenotype
|
16155193 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
20453063 | GOA |
CHD7 Protein Structure
Chromo: Chromo (CHRromatin Organisation MOdifier) domain (801 - 861)
Chromo: Chromo (CHRromatin Organisation MOdifier) domain (883 - 934)
SNF2_N: SNF2 family N-terminal domain (971 - 1258)
Helicase_C: Helicase conserved C-terminal domain (1325 - 1404)
BRK: BRK domain (2562 - 2606)
BRK: BRK domain (2640 - 2685)
- 0
- 500
- 1000
- 1500
- 2000
- 2500
- 2997 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
chromodomain-helicase-DNA-binding protein 7 |
|
CHD7 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
CHD7 | Q9P2D1 | SMARCC2 | Homo sapiens | Q8TAQ2 | 20130577 | |
|
Intra
|
CHD7 | Q9P2D1 | CHD8 | Homo sapiens | Q9HCK8-2 | 20453063 | |
|
Intra
|
CHD7 | Q9P2D1 | PBRM1 | Homo sapiens | Q86U86 | 20130577 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Charge Syndrome |
|
|
| Hypogonadotropic Hypogonadism 5 With Or Without Anosmia |
|
|
| Scoliosis, Isolated 3 |
|
|
| Kallmann Syndrome 5 |
|
|
| Chd7 Disorder |
|
|
| Retinochoroidal Coloboma |
|
|
| Normosmic Congenital Hypogonadotropic Hypogonadism |
|
|
| Myopia |
|
|
| Hypothyroidism |
|
|
| Wiedemann-Steiner Syndrome |
|
|
| Scoliosis |
|
|
| 3mc Syndrome |
|
|
| Kallmann Syndrome |
|
|
| Omenn Syndrome |
|
|
| Choanal Atresia, Posterior |
|
|
| Pyloric Stenosis |
|
|
| Atrial Heart Septal Defect |
|
|
| Interatrial Communication |
|
|
| Idiopathic Scoliosis |
|
|
| Heart Disease |
|
|
| Hypogonadotropic Hypogonadism |
|
|
| Hypogonadism |
|
|
| Coloboma Of Macula |
|
|
| Treacher Collins Syndrome 1 |
|
|
| Esophageal Atresia |
|
|
| T-Cell Immunodeficiency With Thymic Aplasia |
|
|
| Microphthalmia, Syndromic 3 |
|
|
| Cleft Lip |
|
|
| Kabuki Syndrome 1 |
|
|
| Vacterl Association |
|
|
| Laryngomalacia |
|
|
| Deafness, Autosomal Dominant 4a |
|
|
| Anus, Imperforate |
|
|
| Deafness, Autosomal Recessive 4, With Enlarged Vestibular Aqueduct |
|
|
| Feingold Syndrome 1 |
|
|
| Noonan Syndrome 1 |
|
|
| Nasal Cavity Disease |
|
|
| Sensorineural Hearing Loss |
|
|
| Otopalatodigital Syndrome, Type I |
|
|
| Papillorenal Syndrome |
|
|
| Waardenburg'S Syndrome |
|
|
| Branchiooculofacial Syndrome |
|
|
| Nose Disease |
|
|
| Fraser Syndrome 1 |
|
|
| Orofacial Cleft |
|
|
| Pallister-Hall Syndrome |
|
|
| Heart Septal Defect |
|
|
| Spinocerebellar Ataxia, X-Linked 3 |
|
|
| Spinocerebellar Ataxia, X-Linked 4 |
|
|
| Branchiootorenal Syndrome |
|
|
| Patent Ductus Arteriosus 1 |
|
|
| Autosomal Dominant Intellectual Developmental Disorder 31 |
|
|
| Esotropia |
|
|
| Branchiootic Syndrome |
|
|
| Cryptorchidism, Unilateral Or Bilateral |
|
|
| Atrioventricular Septal Defect |
|
|
| Townes-Brocks Syndrome |
|
|
| Peters-Plus Syndrome |
|
|
| Patau Syndrome |
|
|
| Chromosome 22q11.2 Deletion Syndrome, Distal |
|
|
| Physical Disorder |
|
|
| Chromosomal Deletion Syndrome |
|
|
| Congenital Ptosis |
|
|
| Jacobsen Syndrome |
|
|
| Leukodystrophy, Hypomyelinating, 5 |
|
|
| Duane Retraction Syndrome |
|
|
| Renal Hypodysplasia/Aplasia 1 |
|
|
| Septooptic Dysplasia |
|
|
| Waardenburg Syndrome, Type 1 |
|
|
| Velocardiofacial Syndrome |
|
|
| Mowat-Wilson Syndrome |
|
|
| Double Outlet Right Ventricle |
|
|
| Hypoplastic Left Heart Syndrome |
|
|
| Ventricular Septal Defect |
|
|
| Disorder Of Sexual Development |
|
|
| Chromosome 16p13.3 Deletion Syndrome, Proximal |
|
|
| Rasopathy |
|
|
| Sotos Syndrome |
|
|
| Autism |
|
|
| Split-Hand/Foot Malformation 1 With Sensorineural Hearing Loss, Autosomal Recessive |
|
|
| Tetralogy Of Fallot |
|
|
| Wolf-Hirschhorn Syndrome |
|
|
| Strabismus |
|
|
| Cornelia De Lange Syndrome |
|
|
| Tooth Agenesis |
|
|
| Hirschsprung Disease 1 |
|
|
| Eye Disease |
|
|
| Congenital Nervous System Abnormality |
|
|
| Williams-Beuren Syndrome |
|
|
| Primary Ciliary Dyskinesia |
|
|
| Retinitis Pigmentosa |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | CHD7 | RGD | RGD:1311921 |
| Macaca mulatta | CHD7 | VGNC | VGNC:71065 |
| Felis catus | CHD7 | VGNC | VGNC:60848 |
| Canis familiaris | CHD7 | VGNC | VGNC:39205 |
| Mus musculus | CHD7 | MGD | MGI:2444748 |
| Bos taurus | CHD7 | VGNC | VGNC:27282 |
| Others | CHD7 | NCBI |