SCN1A - sodium voltage-gated channel alpha subunit 1 Gene

Species: Rattus norvegicus

Gene Type: protein coding
Gene ID: 81574

About SCN1A

Primary_assembly 3: 50,952,791-51,071,699 reverse strand.mRatBN7.2:CM026976.1

This gene has 3 transcripts (splice variants), 140 orthologues, 26 paralogues and is associated with 55 phenotypes. Biased expression in Brain (RPKM 38.6), Heart (RPKM 37.9) and 1 other tissue.

Summary

Enables sodium ion binding activity and voltage-gated Sodium Channel activity. Involved in neuronal action potential. Located in plasma membrane. Part of voltage-gated Sodium Channel complex. Is integral component of presynaptic membrane. Human ortholog(s) of this gene implicated in Dravet syndrome; developmental and epileptic encephalopathy; familial hemiplegic migraine 3; generalized epilepsy with febrile seizures plus; and generalized epilepsy with febrile seizures plus 2. Orthologous to human SCN1A (sodium voltage-gated channel alpha subunit 1). [provided by Alliance of Genome Resources, Apr 2022]

SCN1A Products (1)

mRNA Protein Name
NM_030875.2 NP_110502.2 sodium channel protein type 1 subunit alpha

Gene Ontology

  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence References Source
enables voltage-gated sodium channel activity IMP
IMP: Inferred from mutant phenotype
17273863 RGD
Biological Process GO Annotation Evidence References Source
involved in neuronal action potential IDA
IDA: Inferred from direct assay
15917456 RGD
involved in neuronal action potential IMP
IMP: Inferred from mutant phenotype
17273863 RGD
Cellular Component GO Annotation Evidence References Source
is active in presynaptic membrane IDA
IDA: Inferred from direct assay
18079688 RGD
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

SCN1A Protein Structure

Ion_trans

Ion_trans: pfam00520 (126 - 432)

Na_trans_cytopl

Na_trans_cytopl: pfam11933 (554 - 717)

Ion_trans

Ion_trans: pfam00520 (766 - 979)

Na_trans_assoc

Na_trans_assoc: pfam06512 (1005 - 1212)

Ion_trans

Ion_trans: pfam00520 (1216 - 1491)

Na_channel_gate

Na_channel_gate: cd13433 (1483 - 1535)

Ion_trans

Ion_trans: pfam00520 (1539 - 1795)

  • 0
  • 400
  • 800
  • 1200
  • 1600
  • 2009 a.a.
Protein Preferred Names Protein Names

sodium channel protein type 1 subunit alpha

  • sodium channel protein type 1 subunit alpha-like

  • sodium channel protein type I subunit alpha

  • sodium channel protein, brain I subunit alpha

  • sodium channel, voltage-gated, type 1, alpha polypeptide

  • sodium channel, voltage-gated, type I, alpha polypeptide

  • sodium channel, voltage-gated, type I, alpha subunit

  • voltage-gated sodium channel subunit alpha Nav1.1

Related Agents

  • Pre-clinical Phase

Pre-clinical Phase

Bioactive Molecules (8)
Cat. No. Product Name
Effect
Purity
Rare Diseases
HY-148410A Zorevunersen sodium Activator 99.27% Unkown
HY-125928 AA43279 Inhibitor 99.80% Unkown
HY-148410C Zorevunensen negative control Activator 99.28% Unkown
HY-181575 TPH2 agonist-1 Inhibitor / Unkown
HY-RS12525 SCN1A Human Pre-designed siRNA Set A Pre-designed Set / Unkown
HY-RS12526 Scn1a Mouse Pre-designed siRNA Set A Pre-designed Set / Unkown
HY-RS12527 SCN1A Rat Pre-designed siRNA Set A Pre-designed Set / Unkown
HY-148410 Zorevunersen Activator 98.50% Unkown

Orthologs Information

Species Symbol Source ID
Homo sapiens SCN1A NCBI NCBI:6323