Fragment-based drug discovery of triazole inhibitors to block PDEδ-RAS protein-protein interaction

  • Eur J Med Chem. 2019 Feb 1:163:597-609. doi: 10.1016/j.ejmech.2018.12.018.
Danqi Chen  1 Yuehong Chen  2 Fulin Lian  1 Liu Chen  1 Yanlian Li  1 Danyan Cao  1 Xin Wang  1 Lin Chen  1 Jian Li  1 Tao Meng  1 Min Huang  3 Meiyu Geng  2 Jingkang Shen  1 Naixia Zhang  4 Bing Xiong  5
Affiliations
  • 1. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China.
  • 2. Division of Anti-tumor Pharmacology, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China.
  • 3. Division of Anti-tumor Pharmacology, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China. Electronic address: [email protected].
  • 4. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China. Electronic address: [email protected].
  • 5. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China. Electronic address: [email protected].
Abstract

Although mutated Ras protein is well recognized as an important drug target, direct targeting Ras has proven to be a daunting task. Recent studies demonstrated that Ras protein needs PDEδ to relocate to plasma membrane to execute its signaling transduction function, which provides a new avenue for modulating the Ras protein. To find small molecules antagonizing the interactions between PDEδ and Ras, here we presented a successful application of fragment-based drug discovery of PDEδ inhibitors. Under the guidance of crystal structures, we are able to quickly optimize the initial fragment into highly potent inhibitors, with more than 2000-fold improvement in binding activity, which further adds to the arsenal towards the inhibition of Ras signaling in Cancer therapy.

Keywords
Fragment-based; Inhibitor; PDEδ-RAS; Protein-protein interaction.