Cellular and Molecular Mechanisms of Innate Memory Responses

  • Annu Rev Immunol. 2025 Apr;43(1):615-640. doi: 10.1146/annurev-immunol-101721-035114.
Musa M Mhlanga  1  2  3 ,  Stephanie Fanucchi  4 ,  Mumin Ozturk  1  2 ,  Maziar Divangahi  5  6
Affiliations
  • 1. Epigenomics & Single Cell Biophysics Group, Department of Cell Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University, Nijmegen, The Netherlands; email: [email protected].
  • 2. Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.
  • 3. Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
  • 4. Lemba Therapeutics, Nijmegen, The Netherlands.
  • 5. Departments of Medicine, Pathology, and Microbiology & Immunology, McGill University, Montreal, Quebec, Canada.
  • 6. McGill University Health Centre, McGill International TB Centre, and Meakins-Christie Laboratories, McGill University, Montreal, Quebec, Canada; email: [email protected].
Abstract

There has been an increasing effort to understand the memory responses of a complex interplay among innate, adaptive, and structural cells in peripheral organs and bone marrow. Trained immunity is coined as the de facto memory of innate immune cells and their progenitors. These cells acquire epigenetic modifications and shift their metabolism to equip an imprinted signature to a persistent fast-responsive functional state. Recent studies highlight the contribution of noncoding RNAs and modulation of chromatin structures in establishing this epigenetic readiness for potential immune perturbations. In this review, we discuss recent studies that highlight trained immunity-mediated memory responses emerging intrinsically in innate immune cells and as a complex interplay with other cells at the organ level. Lastly, we survey epigenetic contributors to trained immunity phenotypes-specifically, a recently discovered regulatory circuit coordinating the regulation of a key driver of trained immunity.

Keywords
epigenetics; immunometabolism; innate immunity; noncoding RNA; organ-trained immunity; vaccine immunology.