AlphaFold-Assisted Design and Synthesis of V-Type Amidazoles as Chitin Synthase Inhibitors against Plutella xylostella

  • J Agric Food Chem. 2025 Sep 10;73(36):22208-22217. doi: 10.1021/acs.jafc.5c03138.
Haoran Yan  1 Yuekun Huang  1 Caixin Yang  1 Xuefen Zheng  1 Bo Yang  1 Yulong Jin  1 Huipeng Pan  2 Chaoqun Zhang  1 Hanhong Xu  2 Ri-Yuan Tang  1  2
Affiliations
  • 1. Key Laboratory of Advanced Materials for Facility Agriculture, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China.
  • 2. State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, China.
Abstract

Chitin synthase serves as a promising target for developing eco-friendly insecticides. Nevertheless, the lack of structural insights into insect chitin synthase has impeded the rational design of specific inhibitors. Herein, we utilized AlphaFold to predict the structure of PxChs1. A series of V-type amidazoles mimicking the catalytic sites of PxChs1 were synthesized. Notably, compounds 6k and 6l exhibited significant insecticidal efficacy against Plutella xylostella, with LC50 values of 0.789 and 0.951 μg/mL, respectively, and induced profound molting disruptions in the larvae. Moreover, the expression of genes involved in chitin metabolism was significantly downregulated. V-type amidazoles with potent insecticidal activity showed favorable docking interactions with PxChs1. Notably, compounds 6k and 6l exhibited minimal toxicity toward Chinese honeybees and Danio rerio. This study provides a valuable approach for developing innovative PxChs1 inhibitors despite a limited structural understanding of the protein.

Keywords
AlphaFold; azole; chitin synthase; insecticide; molecular docking.
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