Structure-guided discovery of 1H-pyrazolo[3,4-c]pyridin-3-amines as a novel class of hematopoietic progenitor kinase 1 (HPK1) inhibitors

  • Eur J Med Chem. 2026 Jun 18:317:119072. doi: 10.1016/j.ejmech.2026.119072.
Huanyu Shi  1 Haotian Tang  2 Yan Li  3 Xinlong Shen  1 Tiantian Fan  1 Wenxiu Weng  2 Danqi Chen  4 Lin Chen  4 Ying Wang  4 Jian Ding  3 Hua Xie  5 Bing Xiong  6
Affiliations
  • 1. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; State Key Laboratory of Chemical Biology, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
  • 2. Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan, 528400, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
  • 3. Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China.
  • 4. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; State Key Laboratory of Chemical Biology, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China.
  • 5. Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan, 528400, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China. Electronic address: [email protected].
  • 6. Department of Medicinal Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; State Key Laboratory of Chemical Biology, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China. Electronic address: [email protected].
Abstract

Hematopoietic progenitor kinase 1 (HPK1) is an intracellular negative regulator of immune responses, particularly in T cell receptor (TCR) signaling. Compelling genetic evidence indicates that HPK1 impairs multiple stages of antitumor immunity largely via its kinase activity, thereby positioning it as a promising target for Cancer Immunotherapy. Starting from two 3-aminopyrazole hits identified through in-house screening, we initiated a structure-guided medicinal chemistry campaign. Through multi-stage optimization to enhance potency by engaging the Asp101 residue and to improve kinase selectivity via molecular hybridization, we developed a novel series of 1H-pyrazolo[3,4-c]pyridin-3-amine derivatives, from which D5 emerged as a key representative. Compound D5 exhibited potent HPK1 inhibitory activity (IC50 = 26.3 nM), and inhibited SLP76 phosphorylation and promoted IL-2 secretion in cell-based assays. Importantly, D5 showed favorable selectivity across diversity and immune-focused kinase panels, representing a marked improvement over its earlier analogue C4. Furthermore, D5 significantly suppressed tumor growth in the CT26 syngeneic mouse model without causing observable body weight loss. Overall, this work provides both a promising lead and a novel chemical scaffold, offering valuable insights and a concrete starting point for HPK1-targeted drug discovery.

Keywords
1H-pyrazolo[3,4-c]pyridin-3-amine; Cancer immunotherapy; HPK1 inhibitor; Hit screening; Structure-guided optimization.
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