GDCNF-11
GDCNF-11 is a type of HSP90 interaction-mediated protein degradation chimera (HIM-PROTAC) degrader that targets and degrades GPX4, with a DC50 of 0.08 μM. GDCNF-11 mediates the ubiquitination and proteasome-dependent degradation of GPX4 by recruiting GPX4 to form a ternary complex with HSP90, increases intracellular lipid peroxides and ROS, and ultimately triggers Ferroptosis. GDCNF-11 inhibits tumor growth in mouse models, downregulates GPX4 protein in xenograft tumors, and upregulates the lipid peroxidation marker. GDCNF-11 can be used for the research of fibrosarcoma.
(Pink: GPX4 ligand (HY-153748); Blue: HSP90 ligand (HY-10212); Black: linker (HY-159772)).
For research use only. We do not sell to patients.
- CAS No.: 2991588-80-6
- Formula: C48H53Cl2N13O5S
- Molecular Weight:994.99
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
All PROTACs Isoforms
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Biological Activity
Description
IC50 & Target
[1]|
GPX4 0.08 μM (DC50) |
Cellular Effect
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Cell Line
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Type | Value | Description | References |
|---|---|---|---|---|
| HT-1080 | IC50 |
0.74 μM
Compound: GDCNF-11
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Cytotoxicity against human HT-1080 cells incubated for 48 hrs by CCK-8 assay
Cytotoxicity against human HT-1080 cells incubated for 48 hrs by CCK-8 assay
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[PMID: 39230973] |
| HT-1080 | IC50 |
35.5 μM
Compound: GDCNF-11
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Cytotoxicity against human HT-1080 cells incubated for 48 hrs in presence of Fer-1 by CCK-8 assay
Cytotoxicity against human HT-1080 cells incubated for 48 hrs in presence of Fer-1 by CCK-8 assay
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[PMID: 39230973] |
In Vitro
GDCNF-11 (0.03-3 μM; 2-24 h, 24 h treatment followed by 0-24 h washout) potently degrades GPX4 in HT-1080 cells with a DC50 of 0.08 μM, following a time-dependent pattern with transient early upregulation and sustained post-washout activity for 12 h[1].
GDCNF-11 (0.1-1 μM; 24 h) does not alter GPX4 mRNA expression in HT-1080 cells, indicating it acts by degrading GPX4 protein rather than modulating transcription[1].
GDCNF-11 binds to recombinant human HSP90α with high affinity, with a Kd value of 0.19 μM; it inhibits the growth of HT-1080 cells, with an IC50 of 0.74 μM; and its cytotoxicity is mainly mediated by ferroptosis[1].
GDCNF-11 (0.3-1 μM; 24 h, 2 h pretreatment) induces proteasome-dependent GPX4 degradation in HT-1080 cells via HSP90 (both α and β isoforms) recruitment, ternary complex formation, and ubiquitination mediated by cullin E3 ligases including CUL5 and CHIP[1].
GDCNF-11 forms a stable ternary complex with HSP90 and GPX4 via conserved ligand-protein interactions and additional inter-protein contacts, supporting its mechanism of action as an HIM-PROTAC[1].
GDCNF-11 (1 μM; 24 h) exhibits high selectivity for GPX4 degradation in HT-1080 cells, with only a small number of additional proteins significantly altered, including upregulated HMOX1[1].
GDCNF-11 (varied; 12 h) dose-dependently increases intracellular lipid peroxidation in HT-1080 cells, an effect that is abrogated by ferroptosis inhibitor Fer-1, consistent with ferroptosis induction[1].
GDCNF-11 (1 μM; 24 h) induces a significant increase in intracellular ROS and Fe2+ levels in HT-1080 cells, consistent with ferroptosis activation[1].
GDCNF-11 (1 μM; 24 h) induces ferroptosis-specific mitochondrial morphological changes and autophagosome-like structures in HT-1080 cells[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:HT-1080 fibrosarcoma cells
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Concentration:0.03, 0.06, 0.1, 0.3, 0.6, 0.8, 1 μM (dose-dependent assays)
1 μM (time-course and washout assays) -
Incubation Time:24 h (dose-dependent assays)
2, 4, 6, 12, 24 h (time-course and washout assays) -
Result:Reduced GPX4 protein levels in a dose-dependent manner, with a GPX4 degradation DC50 of 0.08 μM after 24 h treatment.
Observed a hook effect, with decreased degradation efficacy at 3 μM.
Began to decrease GPX4 protein levels after 12 h of treatment with 1 μM, reaching near-complete depletion at 24 h; noted a transient upregulation of GPX4 at 4 h post-treatment.
Induced sustained GPX4 degradation for 12 h after washout of 1 μM.
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Cell Line:HT-1080 fibrosarcoma cells
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Concentration:0.1, 0.3, 1 μM
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Incubation Time:24 h
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Result:Did not significantly affect GPX4 mRNA levels at any of the tested concentrations.
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Cell Line:HT-1080 fibrosarcoma cells
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Concentration:0.3, 1 μM
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Incubation Time:24 h
2 h pretreatment -
Result:Had its induced GPX4 degradation completely abrogated by MG132 (HY-13259) pretreatment, confirming proteasome-dependent degradation.
Had its induced GPX4 depletion rescued by pretreatment with ML162 (HY-100002) or BIIB021 (HY-10212), demonstrating binding to GPX4 and HSP90 at their respective ligand sites.
Had its induced GPX4 degradation abrogated by HSP90 siRNA knockdown; selective inhibition of either HSP90α or HSP90β reduced degradation efficacy, with combined inhibition further diminishing activity, showing both isoforms contribute to degradation.
Had its induced GPX4 degradation rescued by MLN4924 (HY-70062) pretreatment, confirming cullin E3 ligase involvement.
Had its induced GPX4 degradation reduced by CUL5 or CHIP siRNA knockdown, indicating these E3 ligases mediate the process.
Increased GPX4 ubiquitination levels and promoted co-immunoprecipitation of HSP90 and GPX4, confirming ternary complex formation and ubiquitination-dependent degradation.
Parmacokinetics
| Species | Dose | Route | T1/2 | Tmax | Cmax | MRT0-inf | AUC0-t | AUC0-inf |
|---|---|---|---|---|---|---|---|---|
| Mice[1] | 25 mg/kg | i.p. | 5.0 h | 2 h | 53.1 ng/mL | 6.2 h | 334 ng·h/mL | 346 ng·h/mL |
In Vivo
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:HT-1080 tumor-bearing nude mice (5 weeks old, 18-20 g)[1]
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Dosage:25 mg/kg; 50 mg/kg; 100 mg/kg
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Administration:i.p.; daily; single injection
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Result:Suppressed HT-1080 xenograft growth dose-dependently with stronger antitumor activity than 25 mg/kg ML162 and 25 mg/kg BIIB021.
Downregulated tumor GPX4 and upregulated 4-hydroxynonenal at 12, 24 and 36 h after single 50 mg/kg or 100 mg/kg injection; 50 mg/kg administration only caused mild weight loss and no pathological injury in major organs verified by H&E staining.
Exerted full biosafety with zero mouse deaths at 50 mg/kg, whereas the combination of ML162 and BIIB021 resulted in four mouse deaths by day 18.
Chemical Information
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CAS No. 2991588-80-6
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Molecular Weight 994.99
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Formula C48H53Cl2N13O5S
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SMILES
NC1=NC(NCCC2CCN(CC2)C(CN3N=NC(COC4=C(C=C(C=C4)N(C(CCl)=O)C(C(NCCC5=CC=CC=C5)=O)C6=CC=CS6)Cl)=C3)=O)=C(C7=N1)N=CN7CC8=C(C(OC)=C(C=N8)C)C
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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ROS/oxidative-stress fluorescent staining
ROS/oxidative-stress fluorescent staining uses cell-permeant fluorogenic probes that become fluorescent after oxidation inside cells or tissues; commonly used examples include DCFH-DA/DCFDA for broad cellular oxidant detection, DHE for superoxide-related signal detection, MitoSOX for mitochondrial superoxide-related signal detection, and CellROX probes for oxidative-stress-associated fluorescence readouts. The assay detects probe oxidation rather than a single ROS species unless the probe and analysis method have been chemically validated for that species. DCFH-DA enters cells, is deacetylated by intracellular esterases to DCFH, and produces fluorescent DCF after oxidation, so the readout is used as an operational measure of total cellular oxidative stress rather than a species-specific ROS measurement. DHE and MitoSOX can report superoxide-related oxidation, but red fluorescence alone can include non-specific ethidium-like oxidation products; HPLC or optimized spectral approaches are
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Patient-Derived Xenograft (PDX)
Patient-derived xenograft (PDX) models are generated by engrafting primary human tumor tissue directly into immunodeficient mice, allowing in vivo propagation of patient tumor biology without initial in vitro adaptation. These models are used to preserve key histopathological and molecular characteristics of the original tumor and enable assessment of tumor growth dynamics and therapeutic response in a living organism. The biological readout is tumor engraftment and subsequent growth in the murine host, which reflects the ability of human tumor cells to survive, vascularize, and expand in an immunocompromised microenvironment.
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Patient-Derived Orthotopic Xenograft (PDOX)
Patient-derived orthotopic xenograft (PDOX) modeling implants fresh patient tumor tissue or patient-derived tumor cells into the anatomically corresponding organ or tissue site of immunodeficient mice, usually by surgical orthotopic implantation, to preserve patient tumor histology, local microenvironmental context, invasion, metastatic behavior, and treatment-response features better than subcutaneous implantation. PDOX readouts include tumor engraftment, orthotopic tumor growth, local invasion, metastasis, recurrence after resection, histologic similarity to the donor tumor, biomarker retention, molecular concordance, survival, and response or resistance to therapy. PDOX models are used for preclinical drug testing and individualized therapy evaluation, but engraftment success varies by tumor type and specimen quality.
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Splenic/Portal-Vein Liver Metastasis Xenograft
Splenic and portal-vein liver metastasis xenograft models deliver tumor cells into the portal circulation so that cells reach the liver first and form hepatic metastatic lesions; splenic injection uses the spleen as an access route to the portal system, while direct portal-vein injection introduces cells into the portal vein without requiring splenectomy. The assay detects liver colonization, intrahepatic tumor growth, tumor distribution, treatment response, survival, and liver-metastasis microenvironment changes; readouts include bioluminescence or fluorescence imaging, gross liver nodule counts, liver weight or tumor burden, histology, and survival.
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Ferroptosis Solutions
Ferroptosis is an iron-dependent, non-apoptotic form of regulated cell death characterized by lethal lipid peroxidation and sensitivity to suppression by iron chelators or lipophilic radical-trapping antioxidants. The core pathway links cystine uptake through system Xc−, glutathione availability, GPX4-dependent detoxification of phospholipid hydroperoxides, iron-dependent oxidative reactions, and polyunsaturated-phospholipid metabolism into a cell-death program that is biochemically and morphologically distinct from apoptosis, necrosis, and autophagy. The ferroptosis pathway is experimentally linked to phenotype through chemical and genetic perturbation. Erastin induces ferroptosis by inhibiting cystine uptake through system Xc− and weakening antioxidant defenses, while GPX4 inhibition or depletion causes lipid peroxide accumulation and ferroptotic cancer-cell death. ACSL4 and oxidizable arachidonoyl- or adrenoyl-containing phosphatidylethanolamines shape ferroptosis sensitivity by con
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Subcutaneous Cell-Line-Derived Xenograft
Subcutaneous cell-line-derived xenograft (CDX) models are established by implanting cultured human cancer cell lines into immunodeficient mice, where the injected cells form localized tumors that can be monitored in vivo as a measure of tumorigenic potential, growth kinetics, and treatment response. These models are widely used in oncology research because they allow reproducible tumor formation and enable comparative assessment of tumor growth between different cell lines or genetic manipulations in a controlled in vivo microenvironment. Subcutaneous implantation of cancer cells in immunodeficient mice is a standard approach for evaluating tumor growth behavior and therapeutic response across multiple cancer types, including prostate, esophageal, pancreatic, and colon cancer models.
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Orthotopic Cell-Line Xenograft
Orthotopic cell-line xenograft models involve implantation of human cancer cell lines into the anatomically corresponding organ of immunodeficient mice to reproduce tumor growth within a native microenvironment, enabling more clinically relevant tumor behavior compared with subcutaneous models. These models are widely used because orthotopic placement better recapitulates tumor progression, including invasion and metastatic spread, which are often underrepresented in heterotopic implantation systems. Compared with conventional xenografts, orthotopic implantation is described as more technically complex but provides improved simulation of tumor-microenvironment interactions and metastatic behavior, making it particularly valuable for translational oncology research. Surgical orthotopic implantation approaches have been emphasized as enabling faithful reproduction of clinical cancer features, including metastasis and disease progression patterns that align with the tumor’s organ of origi
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Intraperitoneal/Peritoneal Dissemination Xenograft
Intraperitoneal (IP) or peritoneal dissemination xenograft models are based on the introduction of human cancer cells into the peritoneal cavity of immunodeficient mice, where they attach to peritoneal surfaces, form multicellular aggregates or spheroids, and progressively generate disseminated tumor nodules that mimic advanced peritoneal metastatic disease. These models are widely used to study ovarian cancer progression, tumor-microenvironment interactions, and intraperitoneal therapeutic responses, often incorporating bioluminescence or fluorescence imaging to longitudinally monitor tumor burden in vivo. The biological principle relies on the capacity of tumor cells such as SKOV3 or related ovarian carcinoma lines to survive in suspension, aggregate within ascites-like fluid, adhere to mesothelial surfaces, and invade peritoneal organs, thereby recapitulating human peritoneal carcinomatosis patterns observed in advanced disease.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)