CY3-YNE (solution)
CY3-YNE (solution) is a fluorescent alkyne dye for click chemistry-based fluorescent labeling of azide functional groups.
Solvent and concentration: DMSO: 10 mM
For research use only. We do not sell to patients.
- CAS No.: 1010386-62-5
- Formula: C34H42N3O7S2
- Molecular Weight:668.84
-
Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
In Vitro
Guidelines (The following is our recommended protocol, which serves only as a guideline and should be modified according to your specific needs)[1].
Specific steps:
1) Premix CuSO4 (20 mM aqueous solution) and BTTP (20 mM DMSO solution) at a ratio of 1:4 (v/v) to form the Cu (II)-BTTP complex.
2) Add 2 μL of Cu (II)-BTTP to a solution containing 83 μL of PBS buffer, 4 μL of DMSO and 1 μL of CY3-YNE (10 mM DMSO solution). Then, add 10 μL of freshly prepared sodium ascorbate (25 mM aqueous solution) and mix thoroughly (final concentrations: 100 μM CY3-YNE, 160 μM CuSO4, 640 μM BTTP, 2.5 mM sodium ascorbate). A separate solution without Cu (II)-BTTP is used as the control. Inject the solutions into the channels and incubate for 1 h at room temperature in the dark.
3) After the reaction, thoroughly wash the channels with water and blow dry with nitrogen.
4) Acquire fluorescence images of the chip using a Sapphire biomolecular imager.
5) The imager settings are as follows: Dye: Cy3, Intensity: 5, Pixel size: 500 μm, Scan speed: High, Sample type: Slide.
6) To quantify the areal density of surface functional groups, scan a series of dilutions of CY3-YNE using the same settings.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
Chemical Information
-
CAS No. 1010386-62-5
-
Molecular Weight 668.84
-
Formula C34H42N3O7S2
-
Shipping
Room temperature in continental US; may vary elsewhere.
-
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
-
EdU Incorporation Assay (Click Chemistry-Based DNA Synthesis Measurement)
The EdU incorporation assay measures DNA synthesis by adding the thymidine analog 5-ethynyl-2′-deoxyuridine to cells or tissues, where it is incorporated into newly synthesized DNA during S phase. Incorporated EdU is detected by copper-catalyzed azide-alkyne cycloaddition, in which a fluorescent azide covalently reacts with the ethynyl group on EdU, allowing S-phase cells to be detected by fluorescence microscopy, flow cytometry, or high-content imaging. EdU detection does not require DNA denaturation or anti-BrdU antibody access, which preserves sample structure and improves compatibility with immunostaining and multiparameter cytometry compared with BrdU-based detection. EdU can be cytotoxic in a cell-type- and exposure-dependent manner, so pulse duration, concentration, and continuous-labeling designs should be validated for each cell type.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)