DDX47 - DEAD-box helicase 47 Gene
Also Known as RRP3; E4-DBP; HQ0256; MSTP162
Species: Homo sapiens
About DDX47
This gene has 12 transcripts (splice variants), 211 orthologues and 38 paralogues. Ubiquitous expression in thyroid (RPKM 25.1), lymph node (RPKM 21.1) and 25 other tissues.
Summary
This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene can shuttle between the nucleus and the cytoplasm, and has an RNA-independent ATPase activity. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
DDX47 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_016355.4 | NP_057439.2 | probable ATP-dependent RNA helicase DDX47 isoform 1 |
| NM_201224.2 | NP_957518.1 | probable ATP-dependent RNA helicase DDX47 isoform 2 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
15977068 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in RNA splicing |
IMP
IMP: Inferred from mutant phenotype
|
16963496 | GOA |
| involved in extrinsic apoptotic signaling pathway via death domain receptors |
IDA
IDA: Inferred from direct assay
|
15977068 | GOA |
| involved in rRNA processing |
IMP
IMP: Inferred from mutant phenotype
|
16963496 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in nucleolus |
IDA
IDA: Inferred from direct assay
|
16963496 | GOA |
DDX47 Protein Structure
DEAD: DEAD/DEAH box helicase (48 - 215)
Helicase_C: Helicase conserved C-terminal domain (282 - 358)
- 0
- 100
- 200
- 300
- 400
- 455 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
probable ATP-dependent RNA helicase DDX47 |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | DDX47 | VGNC | VGNC:71664 |
| Mus musculus | DDX47 | MGD | MGI:1915005 |
| Felis catus | DDX47 | VGNC | VGNC:61410 |
| Rattus norvegicus | DDX47 | RGD | RGD:1310437 |
| Bos taurus | DDX47 | VGNC | VGNC:27970 |
| Canis familiaris | DDX47 | VGNC | VGNC:39860 |
| Others | DDX47 | NCBI |