TAF5 - TATA-box binding protein associated factor 5 Gene
Also Known as TAF2D; TAFII100; TAFII-100; TAF(II)100
Species: Homo sapiens
About TAF5
This gene has 10 transcripts (splice variants), 208 orthologues and 1 paralogue. Broad expression in testis (RPKM 8.2), lymph node (RPKM 2.6) and 24 other tissues.
Summary
Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
TAF5 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_006951.5 | NP_008882.2 | transcription initiation factor TFIID subunit 5 isoform 1 |
| NM_139052.3 | NP_620640.1 | transcription initiation factor TFIID subunit 5 isoform 2 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| contributes to RNA polymerase II general transcription initiation factor activity |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| enables RNA polymerase II general transcription initiation factor activity |
IMP
IMP: Inferred from mutant phenotype
|
9045704 | GOA |
| enables identical protein binding |
IPI
IPI: Inferred from physical interaction
|
17227857 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
9045704 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in DNA-templated transcription initiation |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in RNA polymerase II preinitiation complex assembly |
IPI
IPI: Inferred from physical interaction
|
27007846 | GOA |
| involved in mRNA transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in positive regulation of transcription initiation by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in transcription initiation at RNA polymerase II promoter |
IDA
IDA: Inferred from direct assay
|
9045704 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in chromatin |
IDA
IDA: Inferred from direct assay
|
24289924 | GOA |
| NOT located in nucleolus |
IDA
IDA: Inferred from direct assay
|
15637059 | GOA |
| located in nucleus |
EXP
EXP: Inferred from Experiment
|
23332750 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
15637059 | GOA |
| part of transcription factor TFIID complex |
IDA
IDA: Inferred from direct assay
|
9045704 | GOA |
| part of transcription factor TFIID complex |
IPI
IPI: Inferred from physical interaction
|
23332750 | GOA |
| part of transcription factor TFTC complex |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
TAF5 Protein Structure
TFIID_NTD2: WD40 associated region in TFIID subunit, NTD2 domain (202 - 337)
WD40: WD domain, G-beta repeat (472 - 498)
WD40: WD domain, G-beta repeat (536 - 571)
WD40: WD domain, G-beta repeat (576 - 612)
WD40: WD domain, G-beta repeat (618 - 655)
WD40: WD domain, G-beta repeat (659 - 697)
WD40: WD domain, G-beta repeat (704 - 739)
- 0
- 200
- 400
- 600
- 800 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
transcription initiation factor TFIID subunit 5 |
|
TAF5 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 23292512 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 23292512 | |
|
Intra
|
TAF5 | Q15542 | TAF6 | Homo sapiens | P49848 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 23292512 | |
|
Intra
|
TAF5 | Q15542 | TAF6 | Homo sapiens | P49848 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF6 | Homo sapiens | P49848 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 23292512 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 17355863 | |
|
Intra
|
TAF5 | Q15542 | TAF9 | Homo sapiens | Q16594 | 23292512 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Canis familiaris | TAF5 | VGNC | VGNC:47083 |
| Macaca mulatta | TAF5 | VGNC | VGNC:78092 |
| Mus musculus | TAF5 | MGD | MGI:2442144 |
| Felis catus | TAF5 | VGNC | VGNC:65933 |
| Rattus norvegicus | TAF5 | RGD | RGD:1311332 |
| Bos taurus | TAF5 | VGNC | VGNC:35576 |
| Others | TAF5 | NCBI |