TAF9 - TATA-box binding protein associated factor 9 Gene
Also Known as TAF2G; TAFII31; TAFII32; MGC:5067; TAFII-31; TAFII-32; TAFIID32; STAF31/32
Species: Homo sapiens
About TAF9
This gene has 20 transcripts (splice variants), 1 gene allele, 204 orthologues and 1 paralogue. Broad expression in testis (RPKM 60.1), bone marrow (RPKM 34.1) and 25 other tissues.
Summary
Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds to the basal transcription factor GTF2B as well as to several transcriptional activators such as p53 and VP16. In human, TAF9 and AK6 (GeneID: 102157402) are two distinct genes that share 5' exons. A similar but distinct gene (TAF9L) has been found on the X chromosome and a pseudogene has been identified on chromosome 19. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]
TAF9 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001015892.2 | NP_001015892.1 | transcription initiation factor TFIID subunit 9 |
| NM_003187.5 | NP_003178.1 | transcription initiation factor TFIID subunit 9 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables ATPase binding |
IPI
IPI: Inferred from physical interaction
|
17636026 | GOA |
| enables C2H2 zinc finger domain binding |
IPI
IPI: Inferred from physical interaction
|
19251649 | GOA |
| enables DNA binding |
IDA
IDA: Inferred from direct assay
|
15601843 | GOA |
| enables DNA-binding transcription factor binding |
IPI
IPI: Inferred from physical interaction
|
9171108 | GOA |
| contributes to histone acetyltransferase activity |
IDA
IDA: Inferred from direct assay
|
9674425 | GOA |
| enables p53 binding |
IPI
IPI: Inferred from physical interaction
|
11278372 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
7667268 | GOA |
| enables transcription cis-regulatory region binding |
IDA
IDA: Inferred from direct assay
|
19251649 | GOA |
| enables transcription coactivator activity |
IDA
IDA: Inferred from direct assay
|
11564863 | GOA |
| enables transcription coactivator activity |
IMP
IMP: Inferred from mutant phenotype
|
11278372 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of MLL1 complex |
IDA
IDA: Inferred from direct assay
|
15960975 | GOA |
| part of SAGA complex |
IDA
IDA: Inferred from direct assay
|
9674425 | GOA |
| located in nucleus |
EXP
EXP: Inferred from Experiment
|
23332750 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
11564863 | GOA |
| part of pre-snoRNP complex |
IDA
IDA: Inferred from direct assay
|
17636026 | GOA |
| part of transcription factor TFIID complex |
IDA
IDA: Inferred from direct assay
|
14580349 | GOA |
| part of transcription factor TFIID complex |
IPI
IPI: Inferred from physical interaction
|
23332750 | GOA |
| part of transcription factor TFTC complex |
IDA
IDA: Inferred from direct assay
|
15899866 | GOA |
TAF9 Protein Structure
TFIID-31kDa: Transcription initiation factor IID, 31kD subunit (2 - 130)
- 0
- 100
- 200
- 264 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
transcription initiation factor TFIID subunit 9 |
|
TAF9 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Cross
|
TAF9 | Q16594 | Klf1 | Mus musculus | P46099 | 19251649 | |
|
Intra
|
TAF9 | Q16594 | KPNA1 | Homo sapiens | P52294 | 25416956 | |
|
Intra
|
TAF9 | Q16594 | KPNA1 | Homo sapiens | P52294 | 25416956 | |
|
Intra
|
TAF9 | Q16594 | KPNA1 | Homo sapiens | P52294 | 16713569 | |
|
Intra
|
TAF9 | Q16594 | KPNA1 | Homo sapiens | P52294 | 25416956 | |
|
Intra
|
TAF9 | Q16594 | KPNA6 | Homo sapiens | O60684 | 16713569 | |
|
Intra
|
TAF9 | Q16594 | KPNA6 | Homo sapiens | O60684 | 32296183 | |
|
Intra
|
TAF9 | Q16594 | KPNA6 | Homo sapiens | O60684 | 32296183 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 32296183 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 21516116 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 16189514 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 25416956 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 25416956 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 16713569 | |
|
Intra
|
TAF9 | Q16594 | DRAP1 | Homo sapiens | Q14919 | 32296183 | |
|
Intra
|
TAF9 | Q16594 | TAF6L | Homo sapiens | Q9Y6J9 | 32296183 | |
|
Intra
|
TAF9 | Q16594 | TAF6L | Homo sapiens | Q9Y6J9 | 25416956 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | TAF9 | RGD | RGD:727861 |
| Mus musculus | TAF9 | MGD | MGI:1888697 |
| Canis familiaris | TAF9 | VGNC | VGNC:47090 |
| Bos taurus | TAF9 | VGNC | VGNC:35582 |
| Others | TAF9 | NCBI |