Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
- Nat Commun. 2020 Aug 27;11(1):4304. doi: 10.1038/s41467-020-18001-x.
- 1. Department of Chemical and Biological Engineering and Center for Synthetic Biology, Northwestern University, Evanston, IL, 60208, USA.
- 2. Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
- 3. Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. [email protected].
- 4. The Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. [email protected].
- 5. Department of Chemical and Biological Engineering and Center for Synthetic Biology, Northwestern University, Evanston, IL, 60208, USA. [email protected].
- # Contributed equally.
Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-tRNA substrates is a bottleneck. Here, we rationally design non-canonical amino acid analogs with extended carbon chains (γ-, δ-, ε-, and ζ-) or cyclic structures (cyclobutane, cyclopentane, and cyclohexane) to improve tRNA charging. We then demonstrate site-specific incorporation of these non-canonical, backbone-extended monomers at the N- and C- terminus of peptides using wild-type and engineered ribosomes. This work expands the scope of ribosome-mediated polymerization, setting the stage for new medicines and Materials.