Structural Characterization of the l-Homo-Tyrosine β-Hydroxylase EcdG Involved in Echinocandin Biosynthesis Guides the Engineering of Its Homologous Protein GloM

  • J Nat Prod. 2026 Jun 17. doi: 10.1021/acs.jnatprod.6c00195.
Wenya Liu  1  2 Guang Yang  2 Zhenhua Tian  3 Pengfei Fang  2 Zhijun Tang  4  2 Wen Liu  4  2  3  5
Affiliations
  • 1. Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, China.
  • 2. State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, China.
  • 3. Abiochem Biotechnology Co. Ltd., 1299 Ziyue Road, Shanghai 1299, China.
  • 4. State Key Laboratory of Microbial Metabolism, School of Life Science & Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
  • 5. Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, 1308 Keyuan Road, Shanghai 200240, China.
Abstract

β-Hydroxy-amino acids are key structural motifs of many bioactive natural products, but enzymatic β-hydroxylation of an aromatic amino acid appears to be uncommon. In known cases, this reaction typically occurs on a residue residing in a peptide scaffold or tethered on a carrier protein via a thioester linkage. EcdG, an α-ketoglutarate/Fe(II)-dependent dioxygenase involved in the biosynthesis of echinocandins, is an exception, catalyzing the stereoselective β-hydroxylation of a free l-homotyrosine amino acid. Here, we report a comprehensive structural and mechanistic study of EcdG and use knowledge gained from this study for functional modulation of the homologous protein GloM. High-resolution crystal structures of EcdG in complex with α-ketoglutarate and l-homotyrosine were determined. With the association of site-directed mutagenesis, the molecular basis for substrate recognition and the regio- and stereoselectivity of EcdG was revealed and then used to guide the engineering of GloM. The substrate specificity and oxidation capability of this homologous protein were altered, enabling selective transformation of the unnatural substrate l-homophenylalanine to either a β-hydroxyl product or a γ-keto product. This work provides mechanistic insights into a type of uncommon β-hydroxylase and expands the enzymatic toolbox for selective oxidative functionalization of a free aromatic amino acid.

Products