ATG4D - autophagy related 4D cysteine peptidase Gene
Also Known as APG4D; AUTL4; APG4-D; HsAPG4D
Species: Homo sapiens
About ATG4D
This gene has 12 transcripts (splice variants), 258 orthologues and 3 paralogues. Broad expression in testis (RPKM 21.1), duodenum (RPKM 13.4) and 25 other tissues.
Summary
Autophagy is the process by which endogenous proteins and damaged organelles are destroyed intracellularly. Autophagy is postulated to be essential for cell homeostasis and cell remodeling during differentiation, metamorphosis, non-apoptotic cell death, and aging. Reduced levels of Autophagy have been described in some malignant tumors, and a role for Autophagy in controlling the unregulated cell growth linked to Cancer has been proposed. This gene belongs to the autophagy-related protein 4 (Atg4) family of C54 endopeptidases. Members of this family encode proteins that play a role in the biogenesis of autophagosomes, which sequester the cytosol and organelles for degradation by lysosomes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
ATG4D Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001281504.2 | NP_001268433.1 | cysteine protease ATG4D isoform 2 |
| NM_032885.6 | NP_116274.3 | cysteine protease ATG4D isoform 1 precursor |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables cysteine-type exopeptidase activity |
IDA
IDA: Inferred from direct assay
|
21177865 | GOA |
| enables cysteine-type peptidase activity |
IDA
IDA: Inferred from direct assay
|
21177865 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in autophagosome assembly |
IDA
IDA: Inferred from direct assay
|
21177865 | GOA |
| involved in autophagy |
IDA
IDA: Inferred from direct assay
|
30661429 | GOA |
| involved in mitophagy |
IMP
IMP: Inferred from mutant phenotype
|
33773106 | GOA |
| involved in protein delipidation |
IDA
IDA: Inferred from direct assay
|
29458288 | GOA |
| involved in protein localization to phagophore assembly site |
IMP
IMP: Inferred from mutant phenotype
|
33773106 | GOA |
| involved in proteolysis |
IDA
IDA: Inferred from direct assay
|
21177865 | GOA |
ATG4D Protein Structure
Peptidase_C54: Peptidase family C54 (109 - 412)
- 0
- 100
- 200
- 300
- 400
- 474 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
cysteine protease ATG4D |
|
ATG4D Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P810825 | ATG4D Antibody (YA10068) | WB, ICC/IF | Human |
| HY-P811148 | ATG4D Antibody | WB, IHC-P, ICC/IF, IP | Human, Mouse, Rat |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Bos taurus | ATG4D | VGNC | VGNC:26260 |
| Canis familiaris | ATG4D | VGNC | VGNC:38225 |
| Felis catus | ATG4D | VGNC | VGNC:60005 |
| Macaca mulatta | ATG4D | VGNC | VGNC:108473 |
| Mus musculus | ATG4D | MGD | MGI:2444308 |
| Rattus norvegicus | ATG4D | RGD | RGD:1596392 |
| Others | ATG4D | NCBI |