Halo tag TMR
Based on 5 publication(s) in Google Scholar
Halo tag TMR is a red fluorescent dye composed of Halo tag ligand molecules and TMR (TAMRA). Halo tag can quickly and stably covalently bind to Halo protein with high specificity and affinity (Ex/Em = 550/576 nm).
For research use only. We do not sell to patients.
- Purity: 96.36%
- CAS No.: 2764890-88-0
- Formula: C35H42ClN3O6
- Molecular Weight:636.18
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Storage:
-20°C, protect from light, stored under nitrogen
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen)
Publications Citing Use of MedChemExpress (MCE) Halo tag TMR
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Biological Activity
Guide (The following is our recommended protocol. This protocol is only a guide and should be modified according to your specific needs).
Staining steps[1]:
1) Transfect cells with a plasmid encoding the target HaloTag fusion protein and culture to the desired confluence under appropriate conditions.
2) Replace 1/5 of the serum-free culture medium or PBS with 5× HaloTag TMR working solution to a final concentration of 5 μM. Mix by gently shaking the culture container.
3) Incubate the cells in a 37°C, CO2 incubator for 15 minutes to allow the ligand to covalently bind to the HaloTag protein.
4) For permeable ligands: Remove the ligand-containing medium and replace with an equal volume of prewarmed serum-free culture medium or PBS. Repeat this wash step two more times for a total of three washes. For cell surface markers (non-permeable ligands): Wash twice with serum-free culture medium or PBS to remove excess ligand from the extracellular environment.
5) Incubate the cells in complete medium at 37°C for an additional 30 minutes to ensure complete removal of unbound ligand.
6) Replace the medium with phenol red-free medium (if available) to reduce autofluorescence.
7) Transfer the cells to a container suitable for imaging and observe using a fluorescence microscope.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
Chemical Information
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CAS No. 2764890-88-0
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Appearance Solid
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Molecular Weight 636.18
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Formula C35H42ClN3O6
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Color Purple to purplish red
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SMILES
C/[N+](C)=C1C=CC2=C(C3=CC(C(NCCOCCOCCCCCCCl)=O)=CC=C3C([O-])=O)C4=CC=C(N(C)C)C=C4OC2=C/1
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
-20°C, protect from light, stored under nitrogen
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen)
Publications (5)
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Journal Impact Factor
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Most Recent
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Nature
2026 May;653(8116):1196-1204. PMID: 41922760 -
Cell Rep
2026 Mar 27;45(4):117183. PMID: 41903135 -
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bioRxiv
EXOSC3 S1-domain variants implicated in PCH1b alter RNA exosome cap subunit abundance and thermal stability disrupting rRNA processing and targeting of AU-rich mRNA. [Abstract]2025 Jun 1:2025.05.31.657176. PMID: 40501579
Solvent & Solubility
DMSO : 100 mg/mL (157.19 mM; Need ultrasonic; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)
Protocol
Guidelines (The following is our recommended protocol. This protocol is provided as a guide only and should be modified to suit your specific needs).
Staining Steps[1]:
1) Transfect cells with a plasmid encoding the HaloTag fusion protein of interest and grow to desired confluence under appropriate conditions.
2) Replace 1/5 of the culture medium with 5× HaloTag TMR working solution to a final concentration of 5 μM. Mix by gently shaking the culture vessel.
3) Incubate cells in a 37°C, CO2 incubator for 15 min to allow covalent binding of the ligand to the HaloTag protein.
4) For permeable ligands: Remove the medium containing the ligand and replace with an equal volume of pre-warmed fresh medium. Repeat this wash step two more times for a total of three washes. For cell surface markers (non-permeable ligands): Wash twice with fresh medium to remove excess ligand from the extracellular environment.
5) Continue incubating the cells in complete medium at 37°C for 30 min to ensure that unbound ligand is completely removed.
6) Replace the medium with phenol red-free medium (if available) to reduce autofluorescence.
7) Transfer the cells to a container suitable for imaging and observe using a fluorescence microscope.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
Purity & Documentation
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Data Sheet (272 KB)
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SDS (252 KB)
- English - EN (252 KB)
- Français - FR (252 KB)
- Deutsch - DE (252 KB)
- Norwegian - NO (252 KB)
- Español - ES (252 KB)
- Swedish - SV (252 KB)
- Italian - IT (252 KB)
- Korean - KR (252 KB)
- Portuguese - PT (252 KB)
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Handling Instructions (2659 KB)
References
Complete Stock Solution Preparation Table
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
| Optional Solvent | Concentration Solvent Mass | 1 mg | 5 mg | 10 mg | 25 mg |
|---|---|---|---|---|---|
| DMSO | 1 mM | 1.5719 mL | 7.8594 mL | 15.7188 mL | 39.2971 mL |
| 5 mM | 0.3144 mL | 1.5719 mL | 3.1438 mL | 7.8594 mL | |
| 10 mM | 0.1572 mL | 0.7859 mL | 1.5719 mL | 3.9297 mL | |
| 15 mM | 0.1048 mL | 0.5240 mL | 1.0479 mL | 2.6198 mL | |
| 20 mM | 0.0786 mL | 0.3930 mL | 0.7859 mL | 1.9649 mL | |
| 25 mM | 0.0629 mL | 0.3144 mL | 0.6288 mL | 1.5719 mL | |
| 30 mM | 0.0524 mL | 0.2620 mL | 0.5240 mL | 1.3099 mL | |
| 40 mM | 0.0393 mL | 0.1965 mL | 0.3930 mL | 0.9824 mL | |
| 50 mM | 0.0314 mL | 0.1572 mL | 0.3144 mL | 0.7859 mL | |
| 60 mM | 0.0262 mL | 0.1310 mL | 0.2620 mL | 0.6550 mL | |
| 80 mM | 0.0196 mL | 0.0982 mL | 0.1965 mL | 0.4912 mL | |
| 100 mM | 0.0157 mL | 0.0786 mL | 0.1572 mL | 0.3930 mL |