NS3-IN-2
NS3-IN-2 is a dual-target inhibitor targeting both NS2B‑NS3pro and NS3hel of West Nile virus (WNV). NS3-IN-2 inhibits the enzymatic activity of NS2B‑NS3pro toward polypeptide substrates in a non-competitive manner; for NS3hel, the compound exhibits a non-competitive inhibition mode with respect to ATP and competitive inhibition with respect to the dsDNA substrate. In biochemical assays, NS3-IN-2 has an IC50 = 4.4 μM against NS2B‑NS3pro and an IC50 = 24.0 μM against NS3hel helicase activity. NS3-IN-2 reduces WNV viral replication and exhibits cytotoxicity in hepatoma cells. NS3-IN-2 can be used for research on West Nile virus infection.
For research use only. We do not sell to patients.
- Formula: C18H13Cl3N4S
- Molecular Weight:423.75
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
Cellular Effect
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Cell Line
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Type | Value | Description | References |
|---|---|---|---|---|
| Huh-7 | CC50 |
25.9 μM
|
Cytotoxicity against human hepatoma-derived HuH-7 cells assessed as viability reduction after 24 hrs by MTT assay.
Cytotoxicity against human hepatoma-derived HuH-7 cells assessed as viability reduction after 24 hrs by MTT assay.
|
42691700 |
| Huh-7 | EC50 |
0.42 μM
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Inhibition of West Nile virus replication in human HuH-7 cells assessed as reduction of viral Env gene copy number by RT-qPCR after 24 hrs post infection.
Inhibition of West Nile virus replication in human HuH-7 cells assessed as reduction of viral Env gene copy number by RT-qPCR after 24 hrs post infection.
|
42691700 |
In Vitro
NS3-IN-2 (compound 5e) inhibits purified WNV NS3hel ATPase (IC50 11.5 μM), NS3hel helicase (IC50 24.0 μM), and NS2B-NS3pro protease (IC50 4.4 μM) in cell-free assays[1].
NS3-IN-2 (24 h post-infection) inhibits WNV replication in HuH-7 cells with an EC50 of 0.42 μM[1].
NS3-IN-2 (0-20 μM) acts as an ATP-noncompetitive and dsDNA-competitive inhibitor of WNV NS3hel, and a noncompetitive inhibitor of WNV NS2B-NS3pro against Pyr-RTKR-AMC[1].
NS3-IN-2 (50 μM; 20 min + 20 min) reduces the binding affinity of dsDNA to WNV NS3hel, increasing Kd from 0.796 μM to 2.713 μM[1].
NS3-IN-2 (24 h) showed moderate cytotoxicity in HuH-7 cells with a CC50 of 25.9 μM[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
Chemical Information
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Molecular Weight 423.75
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Formula C18H13Cl3N4S
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SMILES
S=C(N)N1C(C2=CNC3=C2C=CC=C3)CC(C4=CC=C(Cl)C(Cl)=C4Cl)=N1
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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Research Protocol for Infectious Diseases
Infectious-disease experiments test how pathogens interact with host barriers, innate immune receptors, inflammatory signaling, pathogen replication, and tissue injury; pattern-recognition receptors such as TLRs, RIG-I-like receptors, NOD-like receptors, and inflammasomes detect microbial molecules and activate NF-κB, interferon, and cytokine responses. The central hypothesis is that infection severity reflects the balance between pathogen burden and host response: protective inflammation restricts pathogen growth, whereas excessive or mislocalized inflammation contributes to tissue damage and disease phenotype. Unresolved questions include which host pathways are protective versus pathogenic, why some infection models fail to translate to human disease, and which combined readouts best predict clinically relevant infection outcomes.
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Cell Cytotoxicity Assay
Cytotoxicity assays are usually based on the assessment of cell membrane damage, which can also be indirectly detected by measuring cell viability. Detection methods include MTT assay, CKK-8 assay, LDH assay and ATP assay, etc.
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Mammalian live/dead viability and cytotoxicity staining
Live/dead viability and cytotoxicity staining assays are based on the simultaneous detection of intracellular esterase activity in metabolically active (viable) cells and membrane integrity loss in non-viable cells. In commonly used dual-staining approaches, membrane-permeant fluorogenic substrates are converted by intracellular esterases into fluorescent products in live cells, while impermeant DNA-binding dyes selectively enter cells with compromised plasma membranes and label nucleic acids in dead or dying cells, enabling discrimination between viable and non-viable populations by fluorescence microscopy or flow cytometry.
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Liver Cancer Modeling
Liver cancer can be classified into primary liver cancer and secondary liver cancer. Secondary liver cancer is the metastatic liver cancer. Primary liver cancer includes hepatocellular carcinoma (HCC), intrahepatic cholangiocarcinoma (ICC) and fibrolamellar HCC, of which HCC is the most common form, accounting for approximately 90% of primary liver cancers[1]. HCC mouse models include chemical agent-induced models, transplanted tumor models, and genetic engineered models.
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Cell Viability Determination by MTT Colorimetric Assay
The following protocol uses the MTT colorimetric assay as a classic literature-established method for assessing cell viability/metabolic activity in cultured mammalian cells. MTT[3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] is reduced by metabolically active cells to a colored formazan product; the amount of formazan is quantified spectrophotometrically and provides an indirect measure of metabolically active viable cells. Importantly, MTT reduction reflects cellular oxidoreductase/metabolic activity rather than an absolute direct count of living cells, so changes in cellular metabolism can alter the signal independently of cell number.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)