BAY-3827
Based on 18 publication(s) in Google Scholar
BAY-3827, a chemical probe, is a potent and selective AMPK inhibitor with IC50 values of 1.4 nM at low (10 μM ATP concentration) and 15 nM at high (2 mM ATP concentration). BAY-3827 shows over 500-fold selectivity for most of the 331 kinases. BAY-3827 prevents phosphorylation of acetyl-CoA carboxylase 1 and shows strongest anti-proliferative activity in androgen-dependent prostate cancer cell lines.
For research use only. We do not sell to patients.
- Purity : 99.72%
- CAS No.: 2377576-35-5
- Formula: C27H25FN6O
- Molecular Weight:468.53
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Storage:
4°C, protect from light
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light)
Publications Citing Use of MedChemExpress (MCE) BAY-3827
More- Bioact Mater. 2026 Apr 9:63:373-389. [Abstract]
- J Extracell Vesicles. 2023 Jul;12(7):e12342. [Abstract]
- Autophagy. 2026 Feb 9. [Abstract]
- Nat Commun. 2025 Feb 25;16(1):1774. [Abstract]
- Phytomedicine. 2025 Apr:139:156563. [Abstract]
- J Pharm Anal. 2025 Dec 15.
- Cell Chem Biol. 2026 May 21;33(5):683-698.e7. [Abstract]
- J Agric Food Chem. 2025 Dec 22. [Abstract]
- Commun Biol. 2024 Jun 20;7(1):747. [Abstract]
- Cancer Biol Ther. 2025 Dec;26(1):2535824. [Abstract]
- Int J Mol Sci. 2025 Oct 16;26(20):10098. [Abstract]
- Int Immunopharmacol. 2023 Mar:116:109826. [Abstract]
- Dis Model Mech. 2024 Aug 1;17(8):dmm050398. [Abstract]
- Toxicol In Vitro. 2024 Aug 16:105919. [Abstract]
- bioRxiv. 2026 May 21.
- bioRxiv. 2025 March 03.
- bioRxiv. 2024 October 25.
- bioRxiv. 2024 Oct 29:2024.10.25.620328. [Abstract]
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In Vivo Efficacy Study
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Histological Imaging/Staining
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ELISA
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WB
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RT-PCR
All AMPK Isoforms
More
Biological Activity
Description
IC50 & Target
IC50: 1.4 nM (AMPK kinase,10 µM ATP), 15 nM (AMPK kinase, 2 mM ATP), 1324 nM (Aurora A), 124 nM (Flt3), 788 nM (c-Met), 36 nM (Rsk4)[1]
In Vitro
BAY-3827 (0-200 μM) inhibits AMPK kinase activity with IC50 values of 1.4 nM at low, 10 μM ATP concentration and 15 nM at high, 2 mM ATP concentration[1]. BAY-3827 (0-200 μM) inhibits Aurora A, Flt3, c-Met and Rsk4 with IC50 values of 1324, 124, 788 and 36 nM , respectively with 10 μM ATP concentration[1]. BAY-3827 (overnight) strongly reduces ACC1 Ser79 phosphorylation in LNCaP and VCaP cells, and shows a lesser extent in IMR-32 and especially in Colo320 cells[1]. BAY-3827 (0-10 nM; 6 d) shows strong inhibitory effects to LNCaP and VCaP cells[1]. BAY-3827 (1 and 5 μM; 24 and 48 h) represses LIPE gene expression, reduces serine/threonine kinase AKT3 and blocks the expression of several genes from the mitochondrial carnitine palmitoyltransferase (CPT) family which is involved in acyl carnitine formation in VCaP cells[1]. BAY-3827 (5 μM; 2-4 d) significantly increases the formation of lipid droplets in comparison to androgen treatment only[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:LNCaP, VCaP, 22Rv1, C4-2B, PC-3 and DU-145 prostate cancer cell lines
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Concentration:0-10 nM
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Incubation Time:6 d
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Result:Showed strong inhibitory effects for LNCaP and VCaP cells, two prostate cancer cell lines with IC50 values of 0.28 and 1.71 nM, respectily. Inhibited proliferation of 22Rv1 cells with an IC50 value of 5.55 nM.
Chemical Information
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CAS No. 2377576-35-5
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Appearance Solid
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Molecular Weight 468.53
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Formula C27H25FN6O
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Color White to off-white
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SMILES
CCC1=CC=CC=C1C(NC2=NNC3=C2C=C(C4C(C#N)=C(C)N(C)C(C)=C4C#N)C(F)=C3C)=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
4°C, protect from light
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light)
Publications (18)
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Journal Impact Factor
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Most Recent
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Bioact Mater
Melatonin-incorporated brain extracellular matrix hydrogel enhances NSCs mitochondrial metabolism to promote neuroregeneration via the AMPK-PGC-1α-NRF1/TFAM axis after spinal cord injury. [Abstract]2026 Apr 9:63:373-389. PMID: 42006003 -
J Extracell Vesicles
Stromal cell-derived small extracellular vesicles enhance radioresistance of prostate cancer cells via interleukin-8-induced autophagy. [Abstract]2023 Jul;12(7):e12342. PMID: 37387557 -
Autophagy
AMPK promotes TFEB transcriptional activity through dephosphorylation at both MTORC1-dependent and -independent sites. [Abstract]2026 Feb 9. PMID: 41661247 -
Nat Commun
Attenuated growth factor signaling during cell death initiation sensitizes membranes towards peroxidation. [Abstract]2025 Feb 25;16(1):1774. PMID: 40000627 -
Phytomedicine
2025 Apr:139:156563. PMID: 40023068 -
BAY-3827 purchased from MedChemExpress. Usage Cited in: J Pharm Anal. 2025 Dec 15.
BAY-3827 at 10 mg/kg for a duration of 4 weeks. Distinctive micro-CT visuals showcasing both longitudinal and cross-sectional views of the distal femur segments.
BAY-3827 purchased from MedChemExpress. Usage Cited in: J Pharm Anal. 2025 Dec 15.
BAY-3827 was administered at 10 mg/kg for a duration of 4 weeks. Representative images of hematoxylin and eosin (H&E) staining and Masson's staining of the metaphyseal tissue sections of the thigh were presented.
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Cell Chem Biol
Genetically encoded manipulation of ATP/ADP ratio in human cells uncovers proteomic and physiological signatures of energy stress. [Abstract]2026 May 21;33(5):683-698.e7. PMID: 41980778 -
J Agric Food Chem
Natural Dietary Flavonoid Apigenin Mitigates Ulcerative Colitis via Modulating the AMPK/NF-κB/NLRP3 Signaling Axis. [Abstract]2025 Dec 22. PMID: 41428381
BAY-3827 purchased from MedChemExpress. Usage Cited in: J Agric Food Chem. 2025 Dec 22. [Abstract]
ELISA quantification of IL-1β in BMDM supernatants following LPS + nigericin stimulation with or without Api, the AMPK agonist AICAR, or the AMPK inhibitor BAY-3827 (500 nM) was performed.
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Commun Biol
Dorsomorphin inhibits AMPK, upregulates Wnt and Foxo genes and promotes the activation of dormant follicles. [Abstract]2024 Jun 20;7(1):747. PMID: 38902324 -
Cancer Biol Ther
Cooperative CCL2/CCR2 and HGF/MET signaling enhances breast cancer growth and invasion associated with metabolic reprogramming. [Abstract]2025 Dec;26(1):2535824. PMID: 40736024 -
Int J Mol Sci
Comparison of the Effects of Sodium-Glucose Cotransporter 2 Inhibitors on Cardiac Fibroblast Properties. [Abstract]2025 Oct 16;26(20):10098. PMID: 41155391
BAY-3827 purchased from MedChemExpress. Usage Cited in: Int J Mol Sci. 2025 Oct 16;26(20):10098. [Abstract]
HCFs were incubated with the AMPK inhibitor BAY-3827 (500 nM) for 1 h prior to stimulation with DMSO (vehicle) or indicated concentrations of SGLT2i for 3 h.
BAY-3827 purchased from MedChemExpress. Usage Cited in: Int J Mol Sci. 2025 Oct 16;26(20):10098. [Abstract]
HCFs were incubated with the AMPK inhibitor BAY-3827 (500 nM) for 1 h prior to stimulation with DMSO (vehicle) or indicated concentrations of SGLT2i for 72 h.
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Int Immunopharmacol
Anti-Na+/K+-ATPase DR antibody attenuates UUO-induced renal fibrosis through inhibition of Na+/K+-ATPase α1-dependent HMGB1 release. [Abstract]2023 Mar:116:109826. PMID: 36764269 -
Dis Model Mech
C-C chemokine ligand 2 signaling promotes skeletal muscle wasting in non-tumor and breast tumor mouse models. [Abstract]2024 Aug 1;17(8):dmm050398. PMID: 38973385 -
Toxicol In Vitro
Isobavachin induces autophagy-mediated cytotoxicity in AML12 cells via AMPK and PI3K/Akt/mTOR pathways. [Abstract]2024 Aug 16:105919. PMID: 39154867 -
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bioRxiv
Adiponectin Signaling Regulates Urinary Bladder Function by Blunting Smooth Muscle Purinergic Contractility. [Abstract]2024 Oct 29:2024.10.25.620328. PMID: 39554160
Solvent & Solubility
In Vitro:
DMSO : 25 mg/mL (53.36 mM; ultrasonic and warming and heat to 60°C; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)
Protocols
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Kinase activity and phosphorylation assays
Kinase activity assays measure the ability of kinases to transfer phosphate groups from ATP to specific substrates, while phosphorylation assays detect the presence and levels of phosphorylated proteins. Common methods include radiolabeled ATP incorporation (e. g. ,), ADP release detection via bioluminescence (e. g. ,[3]), enzyme-linked immunosorbent assays (ELISA) for phospho-specific epitopes (e. g. ,[6]), and microtiter-based formats for high-throughput screening (e. g. ,[8]). The ADP-Glo assay quantifies kinase activity by measuring ADP produced during phosphorylation using a luciferase-based system. Radiometric assays involve autoradiography or scintillation counting after incorporation of 32P-labeled ATP into substrate proteins. ELISA-based approaches rely on phospho-specific antibodies to detect activated kinases in cell lysates or purified samples.
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Western Blot
Western blotting (WB) is a commonly used experimental method in molecular biology, biochemistry, and immunogenetics for identifying and quantifying target proteins. It combines gel electrophoresis with immunoassay, enabling researchers to analyze protein expression, post-translational modifications, and molecular weight.
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Cell Cytotoxicity Assay
Cytotoxicity assays are usually based on the assessment of cell membrane damage, which can also be indirectly detected by measuring cell viability. Detection methods include MTT assay, CKK-8 assay, LDH assay and ATP assay, etc.
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Research Protocol for Endocrine Diseases
Endocrine diseases often arise from disrupted hormone production, hormone signaling, or target-tissue responsiveness; for diabetes-focused endocrine disease models, insulin signaling regulates glucose uptake, hepatic glucose output, lipid metabolism, and β-cell compensation. Type 2 diabetes develops through interacting defects in insulin resistance, β-cell dysfunction, adipose inflammation, hepatic glucose overproduction, altered incretin signaling, and ectopic lipid metabolism. A major unresolved question is whether endocrine dysfunction is driven primarily by target-tissue insulin resistance, intrinsic β-cell failure, immune/inflammatory stress, or combined multi-organ failure that differs by disease stage.
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Protocol for Kinase activity and phosphorylation assays
Kinase activity assays measure transfer of phosphate from ATP to a protein or peptide substrate, generating phosphorylated substrate, ADP, or incorporated radiolabeled phosphate as the readout; phosphorylation assays measure site-specific phosphorylation in cells or tissues as a proxy for kinase-pathway activation, inhibition, or substrate regulation. Phosphorylation can be detected by phospho-specific Western blot, immunoprecipitation kinase assay, phospho-immunofluorescence, phospho-flow cytometry, luminescent ADP detection, radiolabeled ATP incorporation, or reporter-based pathway assays, and these readouts can be applied to cancer cells, primary neurons, mouse tumors, organoids, inflammatory macrophages, ferroptosis studies, and mitophagy studies when the kinase target is biologically relevant.
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Cell Viability Determination by MTT Colorimetric Assay
The following protocol uses the MTT colorimetric assay as a classic literature-established method for assessing cell viability/metabolic activity in cultured mammalian cells. MTT[3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] is reduced by metabolically active cells to a colored formazan product; the amount of formazan is quantified spectrophotometrically and provides an indirect measure of metabolically active viable cells. Importantly, MTT reduction reflects cellular oxidoreductase/metabolic activity rather than an absolute direct count of living cells, so changes in cellular metabolism can alter the signal independently of cell number.
Purity & Documentation
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Data Sheet (280 KB)
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SDS (252 KB)
- English - EN (252 KB)
- Français - FR (252 KB)
- Deutsch - DE (252 KB)
- Norwegian - NO (252 KB)
- Español - ES (252 KB)
- Swedish - SV (252 KB)
- Italian - IT (252 KB)
- Korean - KR (252 KB)
- Portuguese - PT (252 KB)
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Handling Instructions (2659 KB)
References
Complete Stock Solution Preparation Table
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
| Optional Solvent | Concentration Solvent Mass | 1 mg | 5 mg | 10 mg | 25 mg |
|---|---|---|---|---|---|
| DMSO | 1 mM | 2.1343 mL | 10.6717 mL | 21.3434 mL | 53.3584 mL |
| 5 mM | 0.4269 mL | 2.1343 mL | 4.2687 mL | 10.6717 mL | |
| 10 mM | 0.2134 mL | 1.0672 mL | 2.1343 mL | 5.3358 mL | |
| 15 mM | 0.1423 mL | 0.7114 mL | 1.4229 mL | 3.5572 mL | |
| 20 mM | 0.1067 mL | 0.5336 mL | 1.0672 mL | 2.6679 mL | |
| 25 mM | 0.0854 mL | 0.4269 mL | 0.8537 mL | 2.1343 mL | |
| 30 mM | 0.0711 mL | 0.3557 mL | 0.7114 mL | 1.7786 mL | |
| 40 mM | 0.0534 mL | 0.2668 mL | 0.5336 mL | 1.3340 mL | |
| 50 mM | 0.0427 mL | 0.2134 mL | 0.4269 mL | 1.0672 mL |