APOBEC3B - apolipoprotein B mRNA editing enzyme catalytic subunit 3B Gene

Also Known as A3B; ARP4; ARCD3; PHRBNL; APOBEC1L; bK150C2.2; DJ742C19.2

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 9582

Summary

This gene is a member of the Cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing Cytidine deaminase APOBEC1. It is thought that the proteins may be RNA editing Enzymes and have roles in growth or cell cycle control. A hybrid gene results from the deletion of approximately 29.5 kb of sequence between this gene, APOBEC3B, and the adjacent gene APOBEC3A. The breakpoints of the deletion are within the two genes, so the deletion allele is predicted to have the promoter and coding region of APOBEC3A, but the 3' UTR of APOBEC3B. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2012]
Biased expression in bone marrow (RPKM 23.5), appendix (RPKM 8.8) and 12 other tissues.

APOBEC3B Products (2)

mRNA Protein Name
NM_001270411.2 NP_001257340.2 DNA dC->dU-editing enzyme APOBEC-3B isoform b
NM_004900.5 NP_004891.5 DNA dC->dU-editing enzyme APOBEC-3B isoform a
Molecular Function GO Annotation Evidence References Source
enables cytidine deaminase activity IMP
IMP: Inferred from mutant phenotype
22457529 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
31217276 GOA
Biological Process GO Annotation Evidence References Source
involved in clearance of foreign intracellular DNA IDA
IDA: Inferred from direct assay
20062055 GOA
involved in defense response to virus IDA
IDA: Inferred from direct assay
22457529 GOA
involved in retrotransposon silencing IDA
IDA: Inferred from direct assay
16527742 GOA
Cellular Component GO Annotation Evidence References Source
located in nucleus IDA
IDA: Inferred from direct assay
16699599 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

APOBEC3B Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Intra
APOBEC3B Q9UH17 CDK4 Homo sapiens P11802 31217276
Intra
APOBEC3B Q9UH17 CDK4 Homo sapiens P11802
PLA
31217276
Intra
APOBEC3B Q9UH17 CDK4 Homo sapiens P11802
IF
31217276
Cross: Cross-species interaction Intra: Intraspecies interaction