TTBK1/2-IN-3
TTBK1/2-IN-3 (Compound 10) is a potent inhibitor of tau tubulin kinase 1 (TTBK1) and TTBK2, with IC50 values of 579 nM and 258 nM, respectively. TTBK1/2-IN-3 inhibits the phosphorylation of TDP-43. TTBK1/2-IN-3 reduces the expression of primary cilia on the surface of iPSCs.
For research use only. We do not sell to patients.
- CAS No.: 2857982-34-2
- Formula: C21H22N4O
- Molecular Weight:346.43
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
In Vitro
TTBK1/2-IN-3 is a dual inhibitor of the purified kinase domains of TTBK1 and TTBK2, with stronger inhibitory activity against TTBK2 than against TTBK1 (IC50 = 258 nM for TTBK2, IC50 = 579 nM for TTBK1)[1].
TTBK1/2-IN-3 binds to human TTBK1 and TTBK2 in live, intact HEK293 cells, with greater potency against TTBK2 than TTBK1 (IC50 = 4.8 μM for TTBK2, IC50 = 9.1 μM for TTBK1), and exhibits stronger activity in permeabilized cells[1].
TTBK1/2-IN-3 (5 μM; 48 h) reduces phosphorylated and total TDP-43 protein levels in SH-SY5Y neuroblastoma cells[1].
TTBK1/2-IN-3 (0.1-1 μM; 24-72 h) potently inhibits primary cilia formation in human induced pluripotent stem cells (iPSCs) in a time- and dose-dependent manner[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:Human SH-SY5Y neuroblastoma cells
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Concentration:5 μM; 0.1, 0.5, 1 μM
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Incubation Time:48 h
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Result:Decreased phospho-TDP-43 expression by ~45% at 5 μM after 48 h compared to untreated controls.
Decreased total TDP-43 expression by ~60% at 5 μM after 48 h compared to untreated controls.
Showed no significant change in total TDP-43 at lower concentrations (0.1, 0.5, 1 μM) after 48 hours.
Chemical Information
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CAS No. 2857982-34-2
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Molecular Weight 346.43
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Formula C21H22N4O
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SMILES
CC(CC)(O)C#CC1=CC2=C(NC3=C2C4=C(C=NC(N)=N4)CCC3)C=C1
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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Kinase activity and phosphorylation assays
Kinase activity assays measure the ability of kinases to transfer phosphate groups from ATP to specific substrates, while phosphorylation assays detect the presence and levels of phosphorylated proteins. Common methods include radiolabeled ATP incorporation (e. g. ,), ADP release detection via bioluminescence (e. g. ,[3]), enzyme-linked immunosorbent assays (ELISA) for phospho-specific epitopes (e. g. ,[6]), and microtiter-based formats for high-throughput screening (e. g. ,[8]). The ADP-Glo assay quantifies kinase activity by measuring ADP produced during phosphorylation using a luciferase-based system. Radiometric assays involve autoradiography or scintillation counting after incorporation of 32P-labeled ATP into substrate proteins. ELISA-based approaches rely on phospho-specific antibodies to detect activated kinases in cell lysates or purified samples.
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Western Blot
Western blotting (WB) is a commonly used experimental method in molecular biology, biochemistry, and immunogenetics for identifying and quantifying target proteins. It combines gel electrophoresis with immunoassay, enabling researchers to analyze protein expression, post-translational modifications, and molecular weight.
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RNA extraction experimental
By lysing cells, releasing RNA, and removing impurities such as proteins and DNA, high-purity RNA products are finally obtained. The commonly used traditional method is the guanidine isothiocyanate/phenol/chloroform method (Trizol), which is suitable for a variety of animal materials including animal tissues, microorganisms, cultured cells, etc., and most plant materials.
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Protocol for Kinase activity and phosphorylation assays
Kinase activity assays measure transfer of phosphate from ATP to a protein or peptide substrate, generating phosphorylated substrate, ADP, or incorporated radiolabeled phosphate as the readout; phosphorylation assays measure site-specific phosphorylation in cells or tissues as a proxy for kinase-pathway activation, inhibition, or substrate regulation. Phosphorylation can be detected by phospho-specific Western blot, immunoprecipitation kinase assay, phospho-immunofluorescence, phospho-flow cytometry, luminescent ADP detection, radiolabeled ATP incorporation, or reporter-based pathway assays, and these readouts can be applied to cancer cells, primary neurons, mouse tumors, organoids, inflammatory macrophages, ferroptosis studies, and mitophagy studies when the kinase target is biologically relevant.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)