DHX16 - DEAH-box helicase 16 Gene
Also Known as DBP2; PRP8; Prp2; DDX16; NMOAS; PRPF2; PRO2014
生物種: Homo sapiens
About DHX16
This gene has 4 transcripts (splice variants), 1 gene allele, 202 orthologues, 18 paralogues and is associated with 2 phenotypes. Ubiquitous expression in testis (RPKM 17.0), spleen (RPKM 9.0) and 25 other tissues.
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which is a functional homolog of fission yeast Prp8 protein involved in cell cycle progression. This gene is mapped to the MHC region on chromosome 6p21.3, a region where many malignant, genetic and autoimmune disease genes are linked. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2018]
DHX16 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_001164239.2 | NP_001157711.1 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 2 |
| NM_001363515.2 | NP_001350444.1 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 3 |
| NM_003587.5 | NP_003578.2 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 1 |
| Molecular Function GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| enables molecular adaptor activity |
IDA
IDA: Inferred from direct assay
|
35263596 | GOA |
| enables pattern recognition receptor activity |
IDA
IDA: Inferred from direct assay
|
35263596 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
22365833 | GOA |
| enables ubiquitin binding |
IDA
IDA: Inferred from direct assay
|
35263596 | GOA |
| Biological Process GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| involved in antiviral innate immune response |
IDA
IDA: Inferred from direct assay
|
35263596 | GOA |
| involved in mRNA splicing, via spliceosome |
IDA
IDA: Inferred from direct assay
|
29360106 | GOA |
| involved in mRNA splicing, via spliceosome |
IMP
IMP: Inferred from mutant phenotype
|
20423332 | GOA |
| Cellular Component GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| part of U2-type precatalytic spliceosome |
IDA
IDA: Inferred from direct assay
|
29360106 | GOA |
| is active in cytoplasm |
IDA
IDA: Inferred from direct assay
|
35263596 | GOA |
| located in nucleoplasm |
IDA
IDA: Inferred from direct assay
|
20423332 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
20423332 | GOA |
| part of spliceosomal complex |
IDA
IDA: Inferred from direct assay
|
25296192 | GOA |
DHX16 Protein Structure
DEAD: DEAD/DEAH box helicase (406 - 556)
Helicase_C: Helicase conserved C-terminal domain (642 - 729)
HA2: Helicase associated domain (HA2) (792 - 882)
OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold (917 - 1015)
- 0
- 200
- 400
- 600
- 800
- 1041 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 |
|
DHX16 Protein-protein interaction Information
|
Type
|
タンパク質名 | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | 参考文献 |
|---|---|---|---|---|---|---|---|
|
Intra
|
DHX16 | O60231 | XAB2 | Homo sapiens | Q9HCS7 | 22365833 | |
|
Intra
|
DHX16 | O60231 | GPKOW | Homo sapiens | Q92917 | 33961781 | |
|
Intra
|
DHX16 | O60231 | GPKOW | Homo sapiens | Q92917 | 22365833 | |
|
Intra
|
DHX16 | O60231 | SF3B2 | Homo sapiens | Q13435 | 22365833 | |
|
Intra
|
DHX16 | O60231 | SF3B2 | Homo sapiens | Q13435 | 22365833 |
関連疾患
| Diseases | Alias | |
|---|---|---|
| Neuromuscular Oculoauditory Syndrome |
|
|
| Plasmodium Malariae Malaria |
|
|
Orthologs Information
| 生物種 | Symbol | 由来 | ID |
|---|---|---|---|
| Rattus norvegicus | DHX16 | RGD | RGD:1302963 |
| Bos taurus | DHX16 | VGNC | VGNC:28049 |
| Felis catus | DHX16 | VGNC | VGNC:61475 |
| Canis familiaris | DHX16 | VGNC | VGNC:39940 |
| Macaca mulatta | DHX16 | VGNC | VGNC:71761 |
| Mus musculus | DHX16 | MGD | MGI:1916442 |
| Others | DHX16 | NCBI |