A natural nucleotide variation in the MIR172C promoter modulates temperature-dependent plant height in maize

  • Cell Rep. 2026 Jun 23;45(6):117548. doi: 10.1016/j.celrep.2026.117548.
Tao Wang  1 ,  Binbin Hu  2 ,  Lifeng Wang  3 ,  Xianchong Li  2 ,  Liya Liu  2 ,  Qing Jiang  2 ,  Zhihui Xue  1 ,  Haichun Jing  1 ,  Huiyong Li  3 ,  Xiaohong Yang  4 ,  Cui Zhang  5
Affiliations
  • 1. State Key Laboratory of Forage Breeding-by-Design and Utilization, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; China National Botanical Garden, Beijing, China.
  • 2. State Key Laboratory of Forage Breeding-by-Design and Utilization, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; China National Botanical Garden, Beijing, China; University of the Chinese Academy of Sciences, Beijing 100049, China.
  • 3. Institute of Cereal Crops, Henan Academy of Agricultural Sciences, Zhengzhou, Henan 450002, China.
  • 4. National Maize Improvement Center, China Agricultural University, Beijing 100193, China.
  • 5. State Key Laboratory of Forage Breeding-by-Design and Utilization, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; China National Botanical Garden, Beijing, China; University of the Chinese Academy of Sciences, Beijing 100049, China. Electronic address: [email protected].
PMID: 42275216 DOI: 10.1016/j.celrep.2026.117548
Abstract

Temperature has a severe impact on maize height. However, the mechanisms by which maize regulates height in response to heat have not been fully established. Here, we perform a genome-wide association study and identify one single nucleotide polymorphism (SNP) located in the maize MIR172C promoter strongly associated with temperature-dependent plant height. This SNP is selected during maize domestication from tropical to temperate zones. Molecular evidence shows that the G-to-A variation enhances the binding of PIF4 to the MIR172C, greatly represses MIR172C transcription. Phenotyping indicates that MIR172C is highly expressed in the meristem to promote internode elongation. miR172c represses its target IDS1 and activates the brassinosteroid (BR) pathway in a temperature-dependent manner. Under heat stress, miR172s regulate IDS1 predominantly by translational inhibition. This study identifies a natural variation modulating temperature-dependent maize height and elucidates the underlying mechanism. This finding reports a key locus for future breeding to enhance environmental adaptability in maize.

Keywords
CP: plant biology; IDS1; PIF4; brassinosteroids; maize; microRNA172; plant height; temperature.
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