SMD-6346
SMD-6346 is an orally active SMARCA2 PROTAC degrader with a DC50 of 3.3 nM. SMD-6346 induces SMARCA2 degradation and exhibits extremely low activity against SMARCA4. SMD-6346 inhibits the growth of SMARCA4-deficient cancer cells and suppresses tumor growth in mouse xenograft models. SMD-6346 can be used for the research of non-small cell lung cancer.
(Pink: SMARCA2 ligand (HY-170817); Blue: Cereblon ligand (HY-W440247); Black: linker).
For research use only. We do not sell to patients.
- CAS No.: 3086248-19-0
- Formula: C46H50ClF2N5O4
- Molecular Weight:810.37
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
IC50 & Target
[1]|
SMARCA2 3.3 nM (DC50) |
In Vitro
SMD-6346 (24 h) potently and selectively degrades SMARCA2 (DC50 = 3.3 nM, Dmax = 91%) in CRISPR/Cas9-modified HeLa cells expressing HiBiT-tagged SMARCA2 and SMARCA4, while it exhibits much weaker degrading activity against SMARCA4 (DC50 > 1000 nM, Dmax = 46%)[1].
SMD-6346 (0.1-10000 nM; 24 h) potently induces nearly complete degradation of SMARCA2 (DC50 is 6 nM in H838 cells, 22 nM in SK-MEL-5 cells, and 11 nM in 22Rv1 cells; Dmax reaches > 95% in all three cell lines), and exhibits over 900-fold selectivity for SMARCA2 over SMARCA4 in 22Rv1 cells[1].
SMD-6346 (0-1 μM; 7 days) potently inhibits the growth of SMARCA4-deficient cancer cell lines (with a GI50 of 4.0 nM in SK-Mel-5, 19 nM in H838, and 78 nM in H1944), while it exhibits only extremely low activity in SMARCA4 wild-type cell lines (GI50 > 1000 nM)[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:H838 (SMARCA4-deficient lung cancer), SK-MEL-5 (SMARCA4-deficient melanoma), 22Rv1 (SMARCA2/4 wild-type prostate cancer)
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Concentration:0.1, 0.3, 1, 3, 10, 30, 100, 300, 1000, 3000 and 10000 nM
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Incubation Time:24 h
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Result:Induced near-complete SMARCA2 degradation (Dmax > 95%) with a DC50 of 6 nM in H838 cells.
Achieved near-complete SMARCA2 degradation (Dmax > 95%) with a DC50 of 22 nM in SK-MEL-5 cells.
Potently degraded SMARCA2 (DC50 = 11 nM, Dmax > 95%) but only modestly reduced SMARCA4 levels (Dmax = 38% even at 10 μM) in 22Rv1 cells.
Resulted in a > 900-fold degradation selectivity for SMARCA2 over SMARCA4 in 22Rv1 cells.
Parmacokinetics
In Vivo
SMD-6346 (5-10 mg/kg; p.o.; administered 5 days per week for 2 consecutive weeks) inhibits tumor growth in H838 xenograft mice[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:CB.17 SCID (female, 6-10 weeks old)[1]
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Dosage:10 mg/kg (single dose; 3 consecutive daily doses); 30 mg/kg (single dose; 3 consecutive daily doses)
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Administration:p.o.; single dose; daily for 3 consecutive days
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Result:Reduced SMARCA2 protein to 24.5% of vehicle control levels at 24 hours after a single 10 mg/kg dose.
Reduced SMARCA2 protein to 13.1% of control at 24 hours after a single 30 mg/kg dose.
Reduced SMARCA2 protein to 28.4% of control at 3 hours and 22.4% of control at 24 hours after the final dose of three daily 10 mg/kg doses.
Reduced SMARCA2 protein to 7.8% of control at 3 hours and 7.9% of control at 24 hours after the final dose of three daily 30 mg/kg doses.
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Animal Model:CB.17 SCID (female, 6-8 weeks old)[1]
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Dosage:5 mg/kg; 10 mg/kg
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Administration:p.o.; daily 5 days per week; 2 weeks
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Result:Inhibited tumor growth by 33% after 2 weeks of treatment with 5 mg/kg dose.
Inhibited tumor growth by 59% after 2 weeks of treatment with 10 mg/kg dose.
Caused minimal weight loss with both doses, indicating good tolerability.
Chemical Information
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CAS No. 3086248-19-0
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Molecular Weight 810.37
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Formula C46H50ClF2N5O4
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SMILES
O=C(C(C1=C(F)C=C(N(CC2)CCC32CCC(CN4CCC(C5=CC(N6C7=NC(C8=C6C=CC=C8Cl)=O)=C(C97CCCCC9)C=C5)CC4)CO3)C=C1F)CC%10)NC%10=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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Patient-Derived Xenograft (PDX)
Patient-derived xenograft (PDX) models are generated by engrafting primary human tumor tissue directly into immunodeficient mice, allowing in vivo propagation of patient tumor biology without initial in vitro adaptation. These models are used to preserve key histopathological and molecular characteristics of the original tumor and enable assessment of tumor growth dynamics and therapeutic response in a living organism. The biological readout is tumor engraftment and subsequent growth in the murine host, which reflects the ability of human tumor cells to survive, vascularize, and expand in an immunocompromised microenvironment.
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Patient-Derived Orthotopic Xenograft (PDOX)
Patient-derived orthotopic xenograft (PDOX) modeling implants fresh patient tumor tissue or patient-derived tumor cells into the anatomically corresponding organ or tissue site of immunodeficient mice, usually by surgical orthotopic implantation, to preserve patient tumor histology, local microenvironmental context, invasion, metastatic behavior, and treatment-response features better than subcutaneous implantation. PDOX readouts include tumor engraftment, orthotopic tumor growth, local invasion, metastasis, recurrence after resection, histologic similarity to the donor tumor, biomarker retention, molecular concordance, survival, and response or resistance to therapy. PDOX models are used for preclinical drug testing and individualized therapy evaluation, but engraftment success varies by tumor type and specimen quality.
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Splenic/Portal-Vein Liver Metastasis Xenograft
Splenic and portal-vein liver metastasis xenograft models deliver tumor cells into the portal circulation so that cells reach the liver first and form hepatic metastatic lesions; splenic injection uses the spleen as an access route to the portal system, while direct portal-vein injection introduces cells into the portal vein without requiring splenectomy. The assay detects liver colonization, intrahepatic tumor growth, tumor distribution, treatment response, survival, and liver-metastasis microenvironment changes; readouts include bioluminescence or fluorescence imaging, gross liver nodule counts, liver weight or tumor burden, histology, and survival.
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Subcutaneous Cell-Line-Derived Xenograft
Subcutaneous cell-line-derived xenograft (CDX) models are established by implanting cultured human cancer cell lines into immunodeficient mice, where the injected cells form localized tumors that can be monitored in vivo as a measure of tumorigenic potential, growth kinetics, and treatment response. These models are widely used in oncology research because they allow reproducible tumor formation and enable comparative assessment of tumor growth between different cell lines or genetic manipulations in a controlled in vivo microenvironment. Subcutaneous implantation of cancer cells in immunodeficient mice is a standard approach for evaluating tumor growth behavior and therapeutic response across multiple cancer types, including prostate, esophageal, pancreatic, and colon cancer models.
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Orthotopic Cell-Line Xenograft
Orthotopic cell-line xenograft models involve implantation of human cancer cell lines into the anatomically corresponding organ of immunodeficient mice to reproduce tumor growth within a native microenvironment, enabling more clinically relevant tumor behavior compared with subcutaneous models. These models are widely used because orthotopic placement better recapitulates tumor progression, including invasion and metastatic spread, which are often underrepresented in heterotopic implantation systems. Compared with conventional xenografts, orthotopic implantation is described as more technically complex but provides improved simulation of tumor-microenvironment interactions and metastatic behavior, making it particularly valuable for translational oncology research. Surgical orthotopic implantation approaches have been emphasized as enabling faithful reproduction of clinical cancer features, including metastasis and disease progression patterns that align with the tumor’s organ of origi
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Intraperitoneal/Peritoneal Dissemination Xenograft
Intraperitoneal (IP) or peritoneal dissemination xenograft models are based on the introduction of human cancer cells into the peritoneal cavity of immunodeficient mice, where they attach to peritoneal surfaces, form multicellular aggregates or spheroids, and progressively generate disseminated tumor nodules that mimic advanced peritoneal metastatic disease. These models are widely used to study ovarian cancer progression, tumor-microenvironment interactions, and intraperitoneal therapeutic responses, often incorporating bioluminescence or fluorescence imaging to longitudinally monitor tumor burden in vivo. The biological principle relies on the capacity of tumor cells such as SKOV3 or related ovarian carcinoma lines to survive in suspension, aggregate within ascites-like fluid, adhere to mesothelial surfaces, and invade peritoneal organs, thereby recapitulating human peritoneal carcinomatosis patterns observed in advanced disease.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)