DDX23 - DEAD-box helicase 23 Gene
Also Known as prp28; PRPF28; U5-100K; SNRNP100; U5-100KD
生物種: Homo sapiens
About DDX23
This gene has 23 transcripts (splice variants), 209 orthologues, 38 paralogues and is associated with 1 phenotype. Ubiquitous expression in lymph node (RPKM 26.9), appendix (RPKM 25.8) and 25 other tissues.
Summary
This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene is a component of the U5 snRNP complex; it may facilitate conformational changes in the spliceosome during nuclear pre-mRNA splicing. An alternatively spliced transcript variant has been found for this gene, but its biological validity has not been determined. [provided by RefSeq, Jul 2008]
DDX23 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_004818.3 | NP_004809.2 | probable ATP-dependent RNA helicase DDX23 |
| Molecular Function GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| NOT enables helicase activity |
IDA
IDA: Inferred from direct assay
|
9539711 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
9774689 | GOA |
| Biological Process GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| involved in R-loop processing |
IDA
IDA: Inferred from direct assay
|
28076779 | GOA |
| Cellular Component GO Annotation | Evidence | 参考文献 | 由来 |
|---|---|---|---|
| part of U4/U6 x U5 tri-snRNP complex |
IDA
IDA: Inferred from direct assay
|
9409622 | GOA |
| part of U4/U6 x U5 tri-snRNP complex |
IPI
IPI: Inferred from physical interaction
|
30975767 | GOA |
| part of U5 snRNP |
IDA
IDA: Inferred from direct assay
|
9539711 | GOA |
| part of catalytic step 2 spliceosome |
IDA
IDA: Inferred from direct assay
|
11991638 | GOA |
| located in chromatin |
IDA
IDA: Inferred from direct assay
|
28076779 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
28076779 | GOA |
DDX23 Protein Structure
DEAD: DEAD/DEAH box helicase (415 - 615)
Helicase_C: Helicase conserved C-terminal domain (683 - 759)
- 0
- 200
- 400
- 600
- 820 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
probable ATP-dependent RNA helicase DDX23 |
|
DDX23 Protein-protein interaction Information
|
Type
|
タンパク質名 | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | 参考文献 |
|---|---|---|---|---|---|---|---|
|
Intra
|
DDX23 | Q9BUQ8 | SF3A2 | Homo sapiens | Q15428 | 17332742 | |
|
Intra
|
DDX23 | Q9BUQ8 | SNRNP40 | Homo sapiens | Q96DI7 | 33961781 | |
|
Intra
|
DDX23 | Q9BUQ8 | SNRNP40 | Homo sapiens | Q96DI7 | 28514442 | |
|
Intra
|
DDX23 | Q9BUQ8 | SNRNP40 | Homo sapiens | Q96DI7 | 9774689 | |
|
Intra
|
DDX23 | Q9BUQ8 | TERF1 | Homo sapiens | P54274 | 21044950 | |
|
Intra
|
DDX23 | Q9BUQ8 | TERF1 | Homo sapiens | P54274 | 21044950 |
関連疾患
| Diseases | Alias | |
|---|---|---|
| Gnathomiasis |
|
|
| Elephantiasis |
|
|
| Distal Hereditary Motor Neuronopathy Type 2 |
|
|
| Retinitis Pigmentosa |
|
|
Orthologs Information
| 生物種 | Symbol | 由来 | ID |
|---|---|---|---|
| Felis catus | DDX23 | VGNC | VGNC:61401 |
| Macaca mulatta | DDX23 | VGNC | VGNC:71644 |
| Rattus norvegicus | DDX23 | RGD | RGD:1308685 |
| Bos taurus | DDX23 | VGNC | VGNC:27959 |
| Mus musculus | DDX23 | MGD | MGI:1921601 |
| Canis familiaris | DDX23 | VGNC | VGNC:39850 |
| Others | DDX23 | NCBI |