6-FAM
Based on 2 publication(s) in Google Scholar
6-FAM (6-Carboxyfluorescein) is an isomer of carboxyfluorescein and is mainly used for sequencing and labeling of nucleic acids.
For research use only. We do not sell to patients.
- Purity: 99.72%
- CAS No.: 3301-79-9
- Formula: C21H12O7
- Molecular Weight:376.32
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Storage:
-20°C, protect from light, stored under nitrogen
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen)
Publications Citing Use of MedChemExpress (MCE) 6-FAM
More-
Bio/Physico-chemical Assay
Biological Activity
Guide (The following is our recommended solution. This solution is merely a guideline and should be modified according to your specific needs.)
In cell experiments, oligonucleotide probes labeled with 6-carboxyfluorescein (6-FAM) were used, mainly through the fluorescence in situ hybridization (FISH) technique [1].
(1) Sample preparation: Prepare chromosome samples of chicken embryonic cells, including steps such as colchicine treatment, hypotonic swelling, and methanol-acetic acid fixation.
(2) Pre-treatment: The chromosomes were treated with RNase A, pepsin and formaldehyde.
(3) Hybridization: The 6-FAM-labeled oligonucleotide was dissolved in the hybridization buffer containing Escherichia coli tRNA (50% formamide, 2×SSC, 10% dextran sulfate) at a concentration of 20 ng/μL. After the DNA and the probe were denatured together, they were hybridized at room temperature in a humid box overnight.
(4) Washing and re-staining: The hybridized slides were washed three times successively in 2×SSC, then dehydrated using a series of 70%-96% ethanol, dried, and sealed with an anti-quenching agent containing DAP I.
(5) Observation and Analysis: Use the Leica DM4000B fluorescence microscope equipped with a monochrome CCD camera DFC350FX and appropriate filters to observe the samples. Then, use the QFISH software to capture and process the colored images of the chromosomes.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Chemical Information
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CAS No. 3301-79-9
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Appearance Solid
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Molecular Weight 376.32
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Formula C21H12O7
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Color Yellow to orange
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SMILES
O=C1OC2(C3=C(OC4=C2C=CC(O)=C4)C=C(O)C=C3)C5=C1C=CC(C(O)=O)=C5
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Synonyms
6-Carboxyfluorescein
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
-20°C, protect from light, stored under nitrogen
* In solvent : -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen)
Publications (2)
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Journal Impact Factor
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Most Recent
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Nat Commun
2025 Aug 30;16(1):8124. PMID: 40885756
6-FAM purchased from MedChemExpress. Usage Cited in: Nat Commun. 2025 Aug 30;16(1):8124. [Abstract]
Concentration dependence of 6-FAM (6-CF, 100-600 μM) transport by human SLCO2A1. The results showed that the Michaelis constant (Km) of SLCO2A1 for 6-FAM (6-CF) was 84.10 ± 31.83 μM at pH 6.0.
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Adv Sci (Weinh)
All-In-One OsciDrop Digital PCR System for Automated and Highly Multiplexed Molecular Diagnostics. [Abstract]2024 Jun;11(21):e2309557. PMID: 38516754
Solvent & Solubility
DMSO : ≥ 40 mg/mL (106.29 mM; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)
* "≥" means soluble, but saturation unknown.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)
Purity & Documentation
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Data Sheet (280 KB)
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SDS (393 KB)
- English - EN (393 KB)
- Français - FR (393 KB)
- Deutsch - DE (393 KB)
- Norwegian - NO (393 KB)
- Español - ES (393 KB)
- Swedish - SV (393 KB)
- Italian - IT (393 KB)
- Portuguese - PT (393 KB)
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Handling Instructions (2659 KB)
References
Complete Stock Solution Preparation Table
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light, stored under nitrogen). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
| Optional Solvent | Concentration Solvent Mass | 1 mg | 5 mg | 10 mg | 25 mg |
|---|---|---|---|---|---|
| DMSO | 1 mM | 2.6573 mL | 13.2866 mL | 26.5731 mL | 66.4328 mL |
| 5 mM | 0.5315 mL | 2.6573 mL | 5.3146 mL | 13.2866 mL | |
| 10 mM | 0.2657 mL | 1.3287 mL | 2.6573 mL | 6.6433 mL | |
| 15 mM | 0.1772 mL | 0.8858 mL | 1.7715 mL | 4.4289 mL | |
| 20 mM | 0.1329 mL | 0.6643 mL | 1.3287 mL | 3.3216 mL | |
| 25 mM | 0.1063 mL | 0.5315 mL | 1.0629 mL | 2.6573 mL | |
| 30 mM | 0.0886 mL | 0.4429 mL | 0.8858 mL | 2.2144 mL | |
| 40 mM | 0.0664 mL | 0.3322 mL | 0.6643 mL | 1.6608 mL | |
| 50 mM | 0.0531 mL | 0.2657 mL | 0.5315 mL | 1.3287 mL | |
| 60 mM | 0.0443 mL | 0.2214 mL | 0.4429 mL | 1.1072 mL | |
| 80 mM | 0.0332 mL | 0.1661 mL | 0.3322 mL | 0.8304 mL | |
| 100 mM | 0.0266 mL | 0.1329 mL | 0.2657 mL | 0.6643 mL |