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PHF5A - PHD finger protein 5A Gene

Also Known as INI; Rds3; SF3B7; SAP14b; SF3b14b; bK223H9.2

Species: Homo sapiens

Gene Type: protein coding

Gene ID: 84844

About PHF5A

Cytogenetic location: 22q13.2 Genomic coordinates (GRCh38): 22:41,459,717-41,468,692 (from NCBI)

This gene has 3 transcripts (splice variants) and 223 orthologues. Ubiquitous expression in bone marrow (RPKM 19.5), lymph node (RPKM 15.5) and 25 other tissues.

Summary

This gene encodes a subunit of the splicing factor 3b protein complex. Splicing factor 3b, together with splicing factor 3a and a 12S RNA unit, forms the U2 small nuclear ribonucleoproteins complex (U2 snRNP). The splicing factor 3b/3a complex binds pre-mRNA upstream of the intron's branch site in a sequence-independent manner and may anchor the U2 snRNP to the pre-mRNA. The protein encoded by this gene contains a PHD-finger-like domain that is flanked by highly basic N- and C-termini. This protein belongs to the PHD-finger superfamily and may act as a chromatin-associated protein. This gene has several pseudogenes on different chromosomes. [provided by RefSeq, Jul 2008]

PHF5A Products (1)

mRNA	Protein	Name
NM_032758.4	NP_116147.1	PHD finger-like domain-containing protein 5A

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Molecular Function GO Annotation	Evidence	References	Source
enables RNA binding	IDA IDA: Inferred from direct assay	27720643	GOA
enables protein binding	IPI IPI: Inferred from physical interaction	17332742	GOA
enables zinc ion binding	IDA IDA: Inferred from direct assay	28541300	GOA

Biological Process GO Annotation	Evidence	References	Source
involved in mRNA splicing, via spliceosome	IDA IDA: Inferred from direct assay	12234937	GOA

Cellular Component GO Annotation	Evidence	References	Source
part of U12-type spliceosomal complex	IDA IDA: Inferred from direct assay	15146077	GOA
part of U2 snRNP	IDA IDA: Inferred from direct assay	12234937	GOA
part of U2-type precatalytic spliceosome	IDA IDA: Inferred from direct assay	29360106	GOA
part of U2-type spliceosomal complex	IDA IDA: Inferred from direct assay	32494006	GOA
part of U2-type spliceosomal complex	IPI IPI: Inferred from physical interaction	27720643	GOA
located in nucleus	IDA IDA: Inferred from direct assay	27720643	GOA

EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

PHF5A Protein Structure

PHF5

0
100
110 a.a.

Protein Preferred Names	Protein Names
PHD finger-like domain-containing protein 5A	PHD finger-like domain protein 5A

PHF5A Protein-protein interaction Information

Type	Protein Name	Protein ID	Interactor	Interactor Species	Interactor ID	Detection Method	References
Intra	PHF5A	Q7RTV0	KIF1B	Homo sapiens	O60333-2	Y2H Pooling	32814053
Intra	PHF5A	Q7RTV0	KIF1B	Homo sapiens	O60333-2	Validated Y2H	32814053
Intra	PHF5A	Q7RTV0	KIF1B	Homo sapiens	O60333-2	Y2H Array	32814053
Intra	PHF5A	Q7RTV0	DMWD	Homo sapiens	G5E9A7	Validated Y2H	32814053
Intra	PHF5A	Q7RTV0	DMWD	Homo sapiens	G5E9A7	Y2H Array	32814053
Intra	PHF5A	Q7RTV0	DMWD	Homo sapiens	G5E9A7	Y2H Pooling	32814053
Intra	PHF5A	Q7RTV0	SF3A2	Homo sapiens	Q15428	Anti Tag CoIP	33961781
Intra	PHF5A	Q7RTV0	SF3A2	Homo sapiens	Q15428	TAP	24981860
Intra	PHF5A	Q7RTV0	SPRED1	Homo sapiens	Q7Z699	Y2H Pooling	32814053
Intra	PHF5A	Q7RTV0	SPRED1	Homo sapiens	Q7Z699	Validated Y2H	32814053
Intra	PHF5A	Q7RTV0	SPRED1	Homo sapiens	Q7Z699	Y2H Array	32814053
Intra	PHF5A	Q7RTV0	WFS1	Homo sapiens	O76024	Y2H Array	32814053
Intra	PHF5A	Q7RTV0	WFS1	Homo sapiens	O76024	Y2H Pooling	32814053
Intra	PHF5A	Q7RTV0	WFS1	Homo sapiens	O76024	Validated Y2H	32814053
Intra	PHF5A	Q7RTV0	PRPS1	Homo sapiens	P60891	Validated Y2H	32814053
Intra	PHF5A	Q7RTV0	PRPS1	Homo sapiens	P60891	Y2H Pooling	32814053
Intra	PHF5A	Q7RTV0	PRPS1	Homo sapiens	P60891	Y2H Array	32814053

Cross: Cross-species interaction Intra: Intraspecies interaction

Related Diseases

Diseases	Alias
Epiphyseal Chondrodysplasia, Miura Type	ECDM Tall Stature-Scoliosis-Macrodactyly Of The Great Toes Syndrome Miura Type Epiphyseal Chondrodysplasia Tall Stature-Scoliosis-Macrodactyly Of The Halluces Syndrome Tall Stature-Long Halluces-Multiple Extra-Epiphyses Syndrome Chondrodysplasia, Epiphyseal, Miura Type

Diseases	Alias
Waldenstroem'S Macroglobulinemia	Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma

Related Agents

Pre-clinical Phase

Pre-clinical Phase

Bioactive Molecules (1)

Cat. No.	Product Name	Effect	Purity	Rare Diseases
HY-RS10428	PHF5A Human Pre-designed siRNA Set A	Pre-designed Set	/	Unkown

Orthologs Information

Species	Symbol	Source	ID
Mus musculus	PHF5A	MGD	MGI:2156864
Bos taurus	PHF5A	VGNC	VGNC:32826
Canis familiaris	PHF5A	VGNC	VGNC:44491
Macaca mulatta	PHF5A	VGNC	VGNC:107913
Felis catus	PHF5A	VGNC	VGNC:64145
Rattus norvegicus	PHF5A	RGD	RGD:621555
Others	PHF5A	NCBI