PROTAC USP39 Degrader-1
Based on 1 Customer Validation
PROTAC USP39 Degrader-1 is a USP39 PROTAC degrader with Kd values of 136 nM and 232 nM, and a DC50 value of 1.06 nM (24 h). PROTAC USP39 Degrader-1 binds to the VHL E3 ubiquitin ligase, forms a ternary complex with USP39, mediates USP39 ubiquitination and proteasomal degradation dependent on VHL recruitment, modulates splicing activity and induces 5' splice site-specific splicing patterns. PROTAC USP39 Degrader-1 can be used in the research of cervical cancer.
(Pink: USP39 ligand (HY-18772); Blue: VHL ligand (HY-125845); Black: linker (HY-140468)).
For research use only. We do not sell to patients.
- Purity: 98.00%
- Formula: C41H52ClN7O8S2
- Molecular Weight:870.48
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Storage:Powder -20°C, 3 years , 4°C, 2 years ; In solvent -80°C, 6 months , -20°C, 1 month
All PROTACs Isoforms
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Biological Activity
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USP39 1.06 nM (DC50) |
PROTAC USP39 Degrader-1 (compound USP39_PROTAC_V1) reduces the thermal stability of purified full-length USP39 protein, decreasing its melting temperature by 1.5 °C[1].
PROTAC USP39 Degrader-1 (0.5 nM-5 μM; 24 h) induces dose-dependent degradation of USP39 protein in HEK293T, LNCap and Kelly cells[1].
PROTAC USP39 Degrader-1 (10 nM-1 µM; 24 h) alters splicing activity in HEK293T cells[1].
PROTAC USP39 Degrader-1 (1 nM-1 µM; 6-24 h) exerts significant target protein degradation activity in HeLa cells transiently overexpressing USP39-OFP, with the optimal treatment condition being 16 h of serum starvation followed by 24 h of compound treatment[1].
PROTAC USP39 Degrader-1 (0.5 nM-5 μM; 6 h-24 h) exerts potent activity in degrading endogenous USP39 protein in HeLa-WT cells (with a 24 h DC50 of approximately 1.06 nM). It degrades its target with high specificity across the whole proteome, resulting in significant downregulation of USP39 and stress-related proteins without affecting homologous proteins[1].
The USP39-degrading effect of PROTAC USP39 Degrader-1 (0.1 nM-0.1 μM; 24 h) is significantly inhibited by the proteasome inhibitor MG132 (HY-13259) in co-treated HeLa-WT cells[1].
The degradation effect of PROTAC USP39 Degrader-1 (10 nM; 24 h) is blocked by the Neddylation inhibitor MLN4924 (HY-70062) in HeLa-USP39-OFP cells co-treated with 1 μM MLN4924[1].
When PROTAC USP39 Degrader-1 is co-treated with 5 μM MLN4924 in HeLa-USP39-OFP cells, its DC50 increases from 13 nM to 204 nM, and its degradation activity is significantly attenuated[1].
PROTAC USP39 Degrader-1 (0.5 nM-0.5 μM) shows significantly attenuated USP39-degrading activity in VHL-knockout HeLa cells, and exhibits potent degrading activity only in the presence of wild-type VHL in HEK293T cells co-expressing USP39-OFP and different VHL plasmids (VHL_WT or truncated VHL_m)[1].
PROTAC USP39 Degrader-1 (0.5 nM-0.5 μM) promotes the formation of a ternary complex between the target protein and VHL_WT in HEK293T cells transfected with different types of plasmids (KD = 12 nM), whereas the complex formation is extremely weak in the presence of VHL_m[1].
PROTAC USP39 Degrader-1 (100 nM; 6 h) significantly enriches USP39 and polyubiquitination, and promotes the binding of USP39 to VHL in HeLa cells co-treated with 10 μM MLN4924[1].
PROTAC USP39 Degrader-1 (10 nM; 24 h) induces aberrant usage of non-canonical 5'-splice sites in HEK293T cells, recapitulating the splicing defects associated with USP39 depletion[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Cell Line:HEK293T, LNCap, and Kelly cells
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Concentration:0.5 nM, 1 nM, 5 nM, 10 nM, 50 nM, 100 nM, 0.5 μM, 1 μM, 5 μM
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Incubation Time:24 hours (with 16-hour starvation)
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Result:Induced a dose-dependent degradation of the USP39 protein in all respective cell lines.
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Cell Line:HeLa-WT cells
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Concentration:1 nM, 5 nM, 50 nM
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Incubation Time:24 h
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Result:Specificity of PROTAC USP39 Degrader-1 was validated, with homologous protein expression remaining unchanged.
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Cell Line:VHL wild-type and VHL knockout (KO) HeLa cells
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Concentration:0.5 nM, 5 nM, 50 nM, 0.5 μM
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Incubation Time:24 h
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Result:lost its ability to degrade the target protein in VHL KO cells, confirming its dependence on VHL recruitment.
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Cell Line:HeLa cells
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Concentration:100 nM (combined with MLN4924)
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Incubation Time:6 h
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Result:Significantly enriched the signal of USP39 bound to VHL and polyubiquitin chains.
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Cell Line:HEK293T cells
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Concentration:10 nM
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Incubation Time:24 h
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Result:Successfully triggered aberrant 5'-splice site recognition in genes such as ZNF414 and CRK by depleting the USP39 protein.
Chemical Information
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Appearance Solid
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Molecular Weight 870.48
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Formula C41H52ClN7O8S2
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Color White to off-white
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SMILES
O=C(CCOCCOCCOCCNC(C1=CSC(NC2=CC=C(C=C2)Cl)=N1)=O)N[C@@H](C(C)(C)C)C(N3[C@H](C(NCC4=CC=C(C5=C(C)N=CS5)C=C4)=O)C[C@@H](O)C3)=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Powder -20°C 3 years 4°C 2 years In solvent -80°C 6 months -20°C 1 month
Solvent & Solubility
DMSO : 100 mg/mL (114.88 mM; Need ultrasonic; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month. When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month. When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)
Purity & Documentation
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Data Sheet (277 KB)
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SDS (252 KB)
- English - EN (252 KB)
- Français - FR (252 KB)
- Deutsch - DE (252 KB)
- Norwegian - NO (252 KB)
- Español - ES (252 KB)
- Swedish - SV (252 KB)
- Italian - IT (252 KB)
- Korean - KR (252 KB)
- Portuguese - PT (252 KB)
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Handling Instructions (2659 KB)
References
Complete Stock Solution Preparation Table
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month. When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
| Optional Solvent | Concentration Solvent Mass | 1 mg | 5 mg | 10 mg | 25 mg |
|---|---|---|---|---|---|
| DMSO | 1 mM | 1.1488 mL | 5.7440 mL | 11.4879 mL | 28.7198 mL |
| 5 mM | 0.2298 mL | 1.1488 mL | 2.2976 mL | 5.7440 mL | |
| 10 mM | 0.1149 mL | 0.5744 mL | 1.1488 mL | 2.8720 mL | |
| 15 mM | 0.0766 mL | 0.3829 mL | 0.7659 mL | 1.9147 mL | |
| 20 mM | 0.0574 mL | 0.2872 mL | 0.5744 mL | 1.4360 mL | |
| 25 mM | 0.0460 mL | 0.2298 mL | 0.4595 mL | 1.1488 mL | |
| 30 mM | 0.0383 mL | 0.1915 mL | 0.3829 mL | 0.9573 mL | |
| 40 mM | 0.0287 mL | 0.1436 mL | 0.2872 mL | 0.7180 mL | |
| 50 mM | 0.0230 mL | 0.1149 mL | 0.2298 mL | 0.5744 mL | |
| 60 mM | 0.0191 mL | 0.0957 mL | 0.1915 mL | 0.4787 mL | |
| 80 mM | 0.0144 mL | 0.0718 mL | 0.1436 mL | 0.3590 mL | |
| 100 mM | 0.0115 mL | 0.0574 mL | 0.1149 mL | 0.2872 mL |