Light-Up Nanostructures with Allosterically Controlled Fluorogenic DNA Aptamers

  • Adv Mater. 2025 Nov 17:e14306. doi: 10.1002/adma.202514306.
Tianqing Zhang  1 Xinmin Qian  2  3  4 Jiayi Zhang  5  6 Huangchen Cui  5  6 Tanxi Bai  5  6 Wen Wang  7  8  9 Yuxin Wang  5  6 Zhaoli Gao  10 Da Han  1 Wenwen Zeng  2  3  4 Bryan Wei  5  6
Affiliations
  • 1. Hangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, 310022, China.
  • 2. Tsinghua-Peking Joint Center for Life Sciences, Beijing, 100084, China.
  • 3. School of Basic Medical Sciences and Institute for Immunology, Tsinghua University, Beijing, 100084, China.
  • 4. Beijing Key Laboratory of Immunological Research of Allergy, Beijing, 100084, China.
  • 5. School of Life Sciences, Tsinghua University, Beijing, 100084, China.
  • 6. Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China.
  • 7. Beijng Key Laboratory of Biomolecular Data Storage, BGI Research, Beijing, 102601, China.
  • 8. State Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Shenzhen, 518083, China.
  • 9. BGI Research, Changzhou, 213299, China.
  • 10. Department of Biomedical Engineering, Chinese University of Hong Kong, Hong Kong, 999077, China.
Abstract

In this study, a systematic approach is presented for the rational design of synthetic allosteric DNA Aptamers. This methodology enables precise control over the allosteric ON-OFF transition in fluorescent DNA Aptamers, allowing for the engineering of Aptamers with highly tunable fluorescent properties. When combined with toehold-mediated strand displacement, a series of allosteric Aptamers is developed in which the target sequence functions as a specific allosteric modulator. Furthermore, these Aptamers are applied in synthetic DNA computing and in the construction of responsive nanostructures that light up upon activation.

Keywords
DNA computing; DNA nanotechnology; allosteric regulation; fluorogenic DNA aptamer.
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