GTF2A2 - general transcription factor IIA subunit 2 Gene
Also Known as TF2A2; TFIIA; T18745; TFIIAS; HsT18745; TFIIA-12; TFIIA-gamma
Species: Homo sapiens
About GTF2A2
This gene has 10 transcripts (splice variants) and 184 orthologues. Broad expression in testis (RPKM 46.4), colon (RPKM 13.2) and 24 other tissues.
Summary
Accurate transcription initiation on TATA-containing class II genes involves the ordered assembly of RNA polymerase II (POLR2A; MIM 180660) and the general initiation factors TFIIA, TFIIB (MIM 189963), TFIID (MIM 313650), TFIIE (MIM 189962), TFIIF (MIM 189968), TFIIG/TFIIJ, and TFIIH (MIM 189972). The first step involves recognition of the TATA element by the TATA-binding subunit (TBP; MIM 600075) and may be regulated by TFIIA, a factor that interacts with both TBP and a TBP-associated factor (TAF; MIM 600475) in TFIID. TFIIA has 2 subunits (43 and 12 kD) in yeast and 3 subunits in higher eukaryotes. In HeLa extracts, it consists of a 35-kD alpha subunit and a 19-kD beta subunit encoded by the N- and C-terminal regions of GTF2A1 (MIM 600520), respectively, and a 12-kD gamma subunit encoded by GTF2A2 (DeJong et al., 1995 [PubMed 7724559]).[supplied by OMIM, Mar 2008]
GTF2A2 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_001320929.2 | NP_001307858.1 | transcription initiation factor IIA subunit 2 |
| NM_001320930.2 | NP_001307859.1 | transcription initiation factor IIA subunit 2 |
| NM_004492.3 | NP_004483.1 | transcription initiation factor IIA subunit 2 |
| Molecular Function GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| enables RNA polymerase II general transcription initiation factor activity |
IDA
IDA: Inferred from direct assay
|
7958899 | GOA |
| enables RNA polymerase II general transcription initiation factor binding |
IPI
IPI: Inferred from physical interaction
|
8626665 | GOA |
| enables TBP-class protein binding |
IPI
IPI: Inferred from physical interaction
|
7724559 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
7724559 | GOA |
| enables protein heterodimerization activity |
IPI
IPI: Inferred from physical interaction
|
8626665 | GOA |
| enables protein homodimerization activity |
IPI
IPI: Inferred from physical interaction
|
8626665 | GOA |
| Biological Process GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| involved in RNA polymerase II preinitiation complex assembly |
IDA
IDA: Inferred from direct assay
|
7958899 | GOA |
| involved in positive regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
10022900 | GOA |
| involved in positive regulation of transcription initiation by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
11030333 | GOA |
| involved in transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
7724559 | GOA |
| involved in transcription initiation at RNA polymerase II promoter |
IDA
IDA: Inferred from direct assay
|
7958899 | GOA |
| Cellular Component GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
10022900 | GOA |
| part of transcription factor TFIIA complex |
IDA
IDA: Inferred from direct assay
|
7724559 | GOA |
| part of transcription factor TFIIA complex |
IPI
IPI: Inferred from physical interaction
|
8626665 | GOA |
| part of transcription factor TFIID complex |
IDA
IDA: Inferred from direct assay
|
27193682 | GOA |
GTF2A2 Protein Structure
TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain (1 - 49)
TFIIA_gamma_C: Transcription initiation factor IIA, gamma subunit (51 - 100)
- 0
- 100
- 109 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
transcription initiation factor IIA subunit 2 |
|
GTF2A2 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | Verweise |
|---|---|---|---|---|---|---|---|
|
Intra
|
GTF2A2 | P52657 | TRIM7 | Homo sapiens | Q9C029 | 32296183 | |
|
Intra
|
GTF2A2 | P52657 | TRIM7 | Homo sapiens | Q9C029 | 32296183 | |
|
Intra
|
GTF2A2 | P52657 | TRIM7 | Homo sapiens | Q9C029 | 32296183 | |
|
Intra
|
GTF2A2 | P52657 | TBP | Homo sapiens | P20226 | 33961781 | |
|
Intra
|
GTF2A2 | P52657 | TBP | Homo sapiens | P20226 | 8626665 | |
|
Intra
|
GTF2A2 | P52657 | TBP | Homo sapiens | P20226 | 7724559 | |
|
Intra
|
GTF2A2 | P52657 | GTF2A1 | Homo sapiens | P52655 | 32296183 | |
|
Intra
|
GTF2A2 | P52657 | GTF2A1 | Homo sapiens | P52655 | 33961781 | |
|
Intra
|
GTF2A2 | P52657 | GTF2A1 | Homo sapiens | P52655 | 31515488 | |
|
Intra
|
GTF2A2 | P52657 | GTF2A1 | Homo sapiens | P52655 | 32296183 | |
|
Intra
|
GTF2A2 | P52657 | GTF2A1 | Homo sapiens | P52655 | 25416956 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | GTF2A2 | VGNC | VGNC:67492 |
| Bos taurus | GTF2A2 | VGNC | VGNC:29692 |
| Rattus norvegicus | GTF2A2 | RGD | RGD:620720 |
| Macaca mulatta | GTF2A2 | VGNC | VGNC:84345 |
| Canis familiaris | GTF2A2 | VGNC | VGNC:41542 |
| Mus musculus | GTF2A2 | MGD | MGI:1933289 |
| Others | GTF2A2 | NCBI |