SMN-C5
SMN-C5 is an inducer of SMN2 exon 7 inclusion. SMN-C5 binds to the SMN2 exon 7 5′-splice site/U1 snRNA helix (Kd = 28 μM) and positively allosterically modulates SMN2 splicing correction. SMN-C5 binds to SMN2 exon 7 ESE2 and partially displaces hnRNP G, enhances the affinity of U1 snRNP for the weak splice site, binds to a bulged adenine in the major groove and forms hydrogen bonds, while not affecting the interaction of Tra2-β1 with ESE2 RNA. SMN-C5 can be used for research on spinal muscular atrophy.
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- CAS. Nr.: 1449592-94-2
- Formel: C21H21FN6O
- Molecular Weight:392.44
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Speicherung:
Please store the product under the recommended conditions in the Certificate of Analysis.
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Biologische Aktivität
Beschreibung
In Vitro
SMN-C5 (3 h) promotes SMN2 exon 7 inclusion in an in vitro splicing assay using HeLa nuclear extract[1].
SMN-C5 has an EC50 of 15 nM in cellular assays using SMA type 1 fibroblasts[1].
SMN-C5 binds to SMN2 ESE2 and the putative ESE RNA of STRN3 in SPR experiments, with stronger binding to the STRN3 element[1].
SMN-C5 (3.13-50 µM) partially competes with the binding of hnRNP G RRM to ESE2 in SPR competition assays[1].
SMN-C5 (4 mM) binds the U1 snRNA:SMN2 5′ss RNA duplex in the major groove upstream of pseudouridine without disrupting U1-C zinc finger binding[1].
SMN-C5 (4 mM) binds ESE2 RNA and induces conformational changes in solution NMR experiments[1].
SMN-C5 (1:5 protein-RNA complex:molecule ratio) shifts hnRNP G RRM toward its free-form state in NMR experiments without affecting the binding of Tra2-β1 to ESE2 RNA[1].
SMN-C5 (0-10 µM; 24 h) promotes SMN2 exon 7 inclusion in HEK293 minigene assays, and its activity requires both ESE2 and the 5′ss[1].
SMN-C5 binds the SMN2 exon 7 5′-splice site/U1 snRNA helix with a Kd of 28 μM and contacts the unpaired A-1 through its carbonyl group[2].
SMN-C5 corrects SMN2 exon 7 splicing in HEK293T cells transfected with pCI-SMN2, with an IC50 of 30 nM[2].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. .
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Cell Line:HEK293 cells
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Concentration:0, 0.01, 0.03, 0.1, 0.3, 1, 3 and 10 µM
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Incubation Time:24 h
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Result:Promoted exon 7 inclusion in the wild-type construct.
Promoted exon 7 inclusion less efficiently in the ΔESE2 construct and required higher compound concentrations than in cells expressing the wild-type construct.
Showed very little but detectable promotion of exon 7 inclusion in the 5′ss G1C construct.
Was completely ineffective in the double-mutant construct (ΔESE2 + 5′ss G1C); no quantification was possible.
Chemical Information
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CAS. Nr. 1449592-94-2
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Molecular Weight 392.44
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Formel C21H21FN6O
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SMILES
O=C1C=C(N=C2C=CC(=CN12)N3CCN(C)CC3)C=4C=C(F)C5=NC(=CN5C4)C
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Versand
Room temperature in continental US; may vary elsewhere.
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Speicherung
Please store the product under the recommended conditions in the Certificate of Analysis.
Reinheit & Dokumentation
Verweise
Calculators
Konzentration (Stammlösung) × Volumen (Stammlösung) = Konzentration (Ziellösung) × Volumen (Ziellösung)