TAF4 - TATA-box binding protein associated factor 4 Gene
Also Known as TAF2C; TAF4A; TAF2C1; TAFII130; TAFII135; TAFII-130; TAFII-135; TAF(II)130; TAF(II)135
Species: Homo sapiens
About TAF4
This gene has 10 transcripts (splice variants), 1 gene allele, 250 orthologues and 1 paralogue. Ubiquitous expression in testis (RPKM 7.8), ovary (RPKM 4.5) and 25 other tissues.
Summary
Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the larger subunits of TFIID that has been shown to potentiate transcriptional activation by retinoic acid, thyroid hormone and vitamin D3 receptors. In addition, this subunit interacts with the transcription factor CREB, which has a glutamine-rich activation domain, and binds to Other proteins containing glutamine-rich regions. Aberrant binding to this subunit by proteins with expanded polyglutamine regions has been suggested as one of the pathogenetic mechanisms underlying a group of neurodegenerative disorders referred to as polyglutamine diseases. [provided by RefSeq, Jul 2008]
TAF4 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_003185.4 | NP_003176.2 | transcription initiation factor TFIID subunit 4 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| contributes to RNA polymerase II general transcription initiation factor activity |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| enables aryl hydrocarbon receptor binding |
IPI
IPI: Inferred from physical interaction
|
15641800 | GOA |
| contributes to core promoter sequence-specific DNA binding |
IDA
IDA: Inferred from direct assay
|
15601843 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
7729427 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in DNA-templated transcription initiation |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in RNA polymerase II preinitiation complex assembly |
IPI
IPI: Inferred from physical interaction
|
27007846 | GOA |
| involved in mRNA transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in positive regulation of transcription initiation by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in transcription initiation at RNA polymerase II promoter |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of MLL1 complex |
IDA
IDA: Inferred from direct assay
|
15960975 | GOA |
| located in chromatin |
IDA
IDA: Inferred from direct assay
|
24289924 | GOA |
| located in nucleus |
EXP
EXP: Inferred from Experiment
|
23332750 | GOA |
| part of protein-containing complex |
IMP
IMP: Inferred from mutant phenotype
|
15641800 | GOA |
| part of transcription factor TFIID complex |
IDA
IDA: Inferred from direct assay
|
14580349 | GOA |
| part of transcription factor TFIID complex |
IPI
IPI: Inferred from physical interaction
|
23332750 | GOA |
| part of transcription factor TFTC complex |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
TAF4 Protein Structure
TAFH: NHR1 homology to TAF (591 - 683)
TAF4: Transcription initiation factor TFIID component TAF4 family (834 - 1083)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1085 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
transcription initiation factor TFIID subunit 4 |
|
TAF4 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
TAF4 | O00268 | TAF12 | Homo sapiens | Q16514-1 | 23292512 | |
|
Intra
|
TAF4 | O00268 | TAF12 | Homo sapiens | Q16514-1 | 23292512 | |
|
Intra
|
TAF4 | O00268 | TAF12 | Homo sapiens | Q16514-1 | 23292512 | |
|
Intra
|
TAF4 | O00268 | TAF12 | Homo sapiens | Q16514-1 | 23292512 | |
|
Intra
|
TAF4 | O00268 | CREB3 | Homo sapiens | O43889 | 17483474 | |
|
Intra
|
TAF4 | O00268 | CREB3 | Homo sapiens | O43889 | 17483474 | |
|
Intra
|
TAF4 | O00268 | CREBZF | Homo sapiens | Q9NS37 | 17483474 | |
|
Intra
|
TAF4 | O00268 | CREBZF | Homo sapiens | Q9NS37 | 17483474 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Ovarian Endometrioid Stromal Sarcoma |
|
|
| Ovary Sarcoma |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Mus musculus | TAF4 | MGD | MGI:2152346 |
| Rattus norvegicus | TAF4 | RGD | RGD:1588072 |
| Bos taurus | TAF4 | VGNC | VGNC:57029 |
| Macaca mulatta | TAF4 | VGNC | VGNC:98455 |
| Canis familiaris | TAF4 | VGNC | VGNC:54737 |
| Felis catus | TAF4 | VGNC | VGNC:81234 |
| Others | TAF4 | NCBI |