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  3. LysoTracker Red

LysoTracker Red  (Synonyms: LysoTracker Red DND-99)

Cat. No.: HY-D1300 Purity: 95.0%
Handling Instructions Technical Support

LysoTracker Red is a Red fluorescently labeled lysosomal probe with a maximum excitation/emission wavelength of 577/590 nm. The structure is composed of a fluorescein group and linked weak bases, which can freely cross the cell membrane and gather on spherical organelles. It is suitable for observing the internal biosynthesis and related pathogenesis of lysosomes.

For research use only. We do not sell to patients.

CAS No. : 231946-72-8

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Customer Review

Based on 15 publication(s) in Google Scholar

Other Forms of LysoTracker Red:

Top Publications Citing Use of Products

    LysoTracker Red purchased from MedChemExpress. Usage Cited in: Nat Biotechnol. 2026 Jan 5.  [Abstract]

    Representative immunostaining images of BEAT treated tumor cells. Lysosomes were stained with LysoTracker Red (30 min), BEAT were stained with DiD (gray), and nuclear were stained with Hoechst (blue).

    LysoTracker Red purchased from MedChemExpress. Usage Cited in: J Immunother Cancer. 2025 Feb 6;13(2):e010150.  [Abstract]

    Neoantigens labeled with FITC were co-cultured with BMDCs for 5 hours. Lysosomes were stained with LysoTracker Red (1:500; 30 min; 4℃) dye. Confocal microscopy was used to observe co-localization of the two fluorescence with cell nuclei (DAPI fluorescence).

    LysoTracker Red purchased from MedChemExpress. Usage Cited in: Mater Today Bio. 2025 Nov 7:35:102527.  [Abstract]

    Endosomal escape of CLBRP in CT26 cells was observed via CLSM at 4 and 12 h posttreatment. The colocalization of EGFP-labeled CLBRP with LysoTracker Red (20 min) -stained endosomes was analyzed.

    LysoTracker Red purchased from MedChemExpress. Usage Cited in: ACS Appl Mater Interfaces. 2025 Aug 6;17(31):44922-44938.  [Abstract]

    CLSM images depicted the process of lysosomal escape of nanoparticles within the cells. Red represented LysoTracker Red (6-12 h), green represented the IR780-labeled nanoparticles, and yellow regions indicated the colocalization of nanoparticles with lysosomes.

    LysoTracker Red purchased from MedChemExpress. Usage Cited in: Aging Cell. 2024 Jun 19:e14256.  [Abstract]

    Representative immunofluorescence images showed colocalization between lysosomes labeled with LysoTracker Red and lipid droplets labeled with the green lipid dye BODIPY.
    • Biological Activity

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    Description

    LysoTracker Red is a Red fluorescently labeled lysosomal probe with a maximum excitation/emission wavelength of 577/590 nm. The structure is composed of a fluorescein group and linked weak bases, which can freely cross the cell membrane and gather on spherical organelles. It is suitable for observing the internal biosynthesis and related pathogenesis of lysosomes[1].

    In Vitro

    Guide (The following is our recommended protocol. This protocol is only a guide and should be modified according to your specific needs).
    Preparation of LysoTracker Red working solution
    1. Working solution preparation:
    1.1 Prepare LysoTracker Red stock solution with DMSO.
    1.2 Dilute storage solution to the working solution using a medium or appropriate buffer (such as PBS) . The recommended working solution is 50-100 nM;
    Note: Please adjust the concentration of the LysoTracker Red working solution according to the actual situation, and use it now.
    2. Cell staining
    2.1 For suspension cells: Centrifuge at 1000 g at 4°C for 3-5 minutes and then discard the supernatant. Wash twice with PBS, 5 minutes each time.
    For adherent cells: Discard the cell culture medium, and add trypsin to dissociate cells to make a single-cell suspension. Centrifuge at 1000 g at 4°C for 3-5 minutes and then discard the supernatant. Wash twice with PBS, 5 minutes each time.
    2.2 Add 1 mL of LysoTracker Red working solution, and then incubate at room temperature for 5-30 minutes.
    2.3 Centrifuge at 400 g at 4°C for 3-4 minutes and then discard the supernatant.
    2.4 Wash twice with PBS, 5 minutes each time.
    2.5 Resuspend cells with serum-free cell culture medium or PBS, and then detect by fluorescence microscope or flow cytometer.

    MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.

    Molecular Weight

    399.25

    Formula

    C20H24BF2N5O

    CAS No.
    Appearance

    Solid

    Color

    Brown to dark brown

    Emission (Em)

    590

    Excitation (Ex)

    577

    SMILES

    O=C(CCC1=CC=C2C=C3C=CC(C4=CC=CN4)=[N]3[B+3]([F-])([N-]21)[F-])NCCN(C)C

    Shipping

    Room temperature in continental US; may vary elsewhere.

    Storage

    4°C, protect from light

    *In solvent : -80°C, 6 months; -20°C, 1 month (protect from light)

    Solvent & Solubility
    In Vitro: 

    DMSO : 5 mg/mL (12.52 mM; Need ultrasonic; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)

    Preparing
    Stock Solutions
    Concentration Solvent Mass 1 mg 5 mg 10 mg
    1 mM 2.5047 mL 12.5235 mL 25.0470 mL
    5 mM 0.5009 mL 2.5047 mL 5.0094 mL
    View the Complete Stock Solution Preparation Table

    * Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
    Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.

    • Molarity Calculator

    • Dilution Calculator

    Mass (g) = Concentration (mol/L) × Volume (L) × Molecular Weight (g/mol)

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    Molecular Weight *

    Concentration (start) × Volume (start) = Concentration (final) × Volume (final)

    This equation is commonly abbreviated as: C1V1 = C2V2

    Concentration (start)

    C1

    ×
    Volume (start)

    V1

    =
    Concentration (final)

    C2

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    Volume (final)

    V2

    In Vivo Dissolution Calculator
    Please enter the basic information of animal experiments:

    Dosage

    mg/kg

    Animal weight
    (per animal)

    g

    Dosing volume
    (per animal)

    μL

    Number of animals

    Recommended: Prepare an additional quantity of animals to account for potential losses during experiments.
    Calculation results:
    Working solution concentration: mg/mL
    Purity & Documentation

    Purity: 98.38%

    References

    Complete Stock Solution Preparation Table

    * Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
    Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (protect from light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.

    Optional Solvent Concentration Solvent Mass 1 mg 5 mg 10 mg 25 mg
    DMSO 1 mM 2.5047 mL 12.5235 mL 25.0470 mL 62.6174 mL
    5 mM 0.5009 mL 2.5047 mL 5.0094 mL 12.5235 mL
    10 mM 0.2505 mL 1.2523 mL 2.5047 mL 6.2617 mL
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    • Do most proteins show cross-species activity?

      Species cross-reactivity must be investigated individually for each product. Many human cytokines will produce a nice response in mouse cell lines, and many mouse proteins will show activity on human cells. Other proteins may have a lower specific activity when used in the opposite species.

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    Product Name:
    LysoTracker Red
    Cat. No.:
    HY-D1300
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