SMARCC1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Gene
Also Known as Rsc8; SRG3; SWI3; BAF155; CRACC1
Species: Homo sapiens
About SMARCC1
This gene has 8 transcripts (splice variants), 234 orthologues and 3 paralogues. Ubiquitous expression in testis (RPKM 18.4), endometrium (RPKM 15.8) and 25 other tissues.
Summary
The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors. [provided by RefSeq, Jul 2008]
SMARCC1 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_003074.4 | NP_003065.3 | SWI/SNF complex subunit SMARCC1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
9891079 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in chromatin remodeling |
IDA
IDA: Inferred from direct assay
|
10078207 | GOA |
| involved in nucleosome disassembly |
IDA
IDA: Inferred from direct assay
|
8895581 | GOA |
| involved in positive regulation of DNA-templated transcription |
IDA
IDA: Inferred from direct assay
|
11018012 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of SWI/SNF complex |
IDA
IDA: Inferred from direct assay
|
8804307 | GOA |
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
28753627 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
28753627 | GOA |
SMARCC1 Protein Structure
SWIRM: SWIRM domain (450 - 537)
Myb_DNA-binding: Myb-like DNA-binding domain (622 - 663)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1105 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
SWI/SNF complex subunit SMARCC1 |
|
SMARCC1 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
SMARCC1 | Q92922 | ADAMTSL4 | Homo sapiens | Q6UY14-3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | ADAMTSL4 | Homo sapiens | Q6UY14-3 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | ADAMTSL4 | Homo sapiens | Q6UY14-3 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | ADAMTSL4 | Homo sapiens | Q6UY14-3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | GSTO2 | Homo sapiens | Q9H4Y5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | GSTO2 | Homo sapiens | Q9H4Y5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | GSTO2 | Homo sapiens | Q9H4Y5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP13-3 | Homo sapiens | Q3SY46 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP13-3 | Homo sapiens | Q3SY46 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | SPATA12 | Homo sapiens | Q7Z6I5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | SPATA12 | Homo sapiens | Q7Z6I5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | VGLL3 | Homo sapiens | A8MV65-2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | VGLL3 | Homo sapiens | A8MV65-2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-2 | Homo sapiens | Q3LI66 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-2 | Homo sapiens | Q3LI66 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | UFSP1 | Homo sapiens | Q6NVU6 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | UFSP1 | Homo sapiens | Q6NVU6 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-1 | Homo sapiens | Q3LI64 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-1 | Homo sapiens | Q3LI64 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP19-2 | Homo sapiens | Q3LHN2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP19-2 | Homo sapiens | Q3LHN2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | SLC15A2 | Homo sapiens | Q16348 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | SLC15A2 | Homo sapiens | Q16348 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | PPIP5K2 | Homo sapiens | O43314-2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | PPIP5K2 | Homo sapiens | O43314-2 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | LRP2BP | Homo sapiens | Q9P2M1 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | LRP2BP | Homo sapiens | Q9P2M1 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | LRP2BP | Homo sapiens | Q9P2M1 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP7-1 | Homo sapiens | Q8IUC3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP7-1 | Homo sapiens | Q8IUC3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP21-2 | Homo sapiens | Q3LI59 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP21-2 | Homo sapiens | Q3LI59 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-3 | Homo sapiens | Q3LI67 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP6-3 | Homo sapiens | Q3LI67 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CARM1 | Homo sapiens | Q86X55 | 24434208 | |
|
Intra
|
SMARCC1 | Q92922 | CARM1 | Homo sapiens | Q86X55 | 24434208 | |
|
Intra
|
SMARCC1 | Q92922 | PTH1R | Homo sapiens | Q03431 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | PTH1R | Homo sapiens | Q03431 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | RELB | Homo sapiens | Q01201 | 14743216 | |
|
Intra
|
SMARCC1 | Q92922 | SMARCD1 | Homo sapiens | Q96GM5 | 35271311 | |
|
Intra
|
SMARCC1 | Q92922 | SMARCD1 | Homo sapiens | Q96GM5 | 24981860 | |
|
Intra
|
SMARCC1 | Q92922 | SMARCD1 | Homo sapiens | Q96GM5 | 24421395 | |
|
Intra
|
SMARCC1 | Q92922 | SMARCD1 | Homo sapiens | Q96GM5 | 24434208 | |
|
Intra
|
SMARCC1 | Q92922 | GLRX3 | Homo sapiens | O76003 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | GLRX3 | Homo sapiens | O76003 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CYSRT1 | Homo sapiens | A8MQ03 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CYSRT1 | Homo sapiens | A8MQ03 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP26-1 | Homo sapiens | Q6PEX3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP26-1 | Homo sapiens | Q6PEX3 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-3 | Homo sapiens | Q9BYR6 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-3 | Homo sapiens | Q9BYR6 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-3 | Homo sapiens | Q9BYR6 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | TRIM42 | Homo sapiens | Q8IWZ5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | TRIM42 | Homo sapiens | Q8IWZ5 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CIDEB | Homo sapiens | Q9UHD4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CIDEB | Homo sapiens | Q9UHD4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CIDEB | Homo sapiens | Q9UHD4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | PLSCR1 | Homo sapiens | O15162 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | PLSCR1 | Homo sapiens | O15162 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | OTX1 | Homo sapiens | P32242 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | OTX1 | Homo sapiens | P32242 | 25416956 | |
|
Intra
|
SMARCC1 | Q92922 | ZNF581 | Homo sapiens | Q9P0T4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | ZNF581 | Homo sapiens | Q9P0T4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | ZNF581 | Homo sapiens | Q9P0T4 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-2 | Homo sapiens | Q9BYR7 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-2 | Homo sapiens | Q9BYR7 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CFP | Homo sapiens | P27918 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | CFP | Homo sapiens | P27918 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | ASCL1 | Homo sapiens | P50553 | 36931659 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-1 | Homo sapiens | Q9BYR8 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-1 | Homo sapiens | Q9BYR8 | 32296183 | |
|
Intra
|
SMARCC1 | Q92922 | KRTAP3-1 | Homo sapiens | Q9BYR8 | 32296183 |
SMARCC1 Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P81308 | SMARCC1 Antibody (YA1046) | WB | Human |
| HY-P81308A | SMARCC1 Antibody (YA1047) | WB, ICC/IF, IP, FC | Human, Rat |
| HY-P85564 | SMARCC1 Antibody (YA5256) | WB | Human |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Congenital Hydrocephalus |
|
|
| Neurilemmomatosis |
|
|
| Rhabdoid Cancer |
|
|
| Kidney Rhabdoid Cancer |
|
|
| Clark-Baraitser Syndrome |
|
|
| Autosomal Dominant Intellectual Developmental Disorder |
|
|
| Hydrocephalus |
|
|
| Ovarian Clear Cell Carcinoma |
|
|
| Atypical Teratoid Rhabdoid Tumor |
|
|
| Coffin-Siris Syndrome 1 |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | SMARCC1 | VGNC | VGNC:65469 |
| Macaca mulatta | SMARCC1 | VGNC | VGNC:84075 |
| Bos taurus | SMARCC1 | VGNC | VGNC:58414 |
| Canis familiaris | SMARCC1 | VGNC | VGNC:46535 |
| Rattus norvegicus | SMARCC1 | RGD | RGD:1304850 |
| Mus musculus | SMARCC1 | MGD | MGI:1203524 |
| Others | SMARCC1 | NCBI |