SMARCC1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Gene

Also Known as Rsc8; SRG3; SWI3; BAF155; CRACC1

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 6599

About SMARCC1

Cytogenetic location: 3p21.31 Genomic coordinates (GRCh38): 3:47,585,269-47,781,893 (from NCBI)

This gene has 8 transcripts (splice variants), 234 orthologues and 3 paralogues. Ubiquitous expression in testis (RPKM 18.4), endometrium (RPKM 15.8) and 25 other tissues.

Summary

The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors. [provided by RefSeq, Jul 2008]

SMARCC1 Products (1)

mRNA Protein Name
NM_003074.4 NP_003065.3 SWI/SNF complex subunit SMARCC1
Molecular Function GO Annotation Evidence References Source
enables protein binding IPI
IPI: Inferred from physical interaction
9891079 GOA
Biological Process GO Annotation Evidence References Source
involved in chromatin remodeling IDA
IDA: Inferred from direct assay
10078207 GOA
involved in nucleosome disassembly IDA
IDA: Inferred from direct assay
8895581 GOA
involved in positive regulation of DNA-templated transcription IDA
IDA: Inferred from direct assay
11018012 GOA
Cellular Component GO Annotation Evidence References Source
part of SWI/SNF complex IDA
IDA: Inferred from direct assay
8804307 GOA
located in cytoplasm IDA
IDA: Inferred from direct assay
28753627 GOA
located in nucleus IDA
IDA: Inferred from direct assay
28753627 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

SMARCC1 Protein Structure

SWIRM

SWIRM: SWIRM domain (450 - 537)

Myb_DNA-binding

Myb_DNA-binding: Myb-like DNA-binding domain (622 - 663)

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  • 1105 a.a.
Protein Preferred Names Protein Names

SWI/SNF complex subunit SMARCC1

  • BRG1-associated factor 155

SMARCC1 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3 32296183
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3 25416956
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3 25416956
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3 32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5 32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5 32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5 32296183
Intra
SMARCC1 Q92922 KRTAP13-3 Homo sapiens Q3SY46 32296183
Intra
SMARCC1 Q92922 KRTAP13-3 Homo sapiens Q3SY46 32296183
Intra
SMARCC1 Q92922 SPATA12 Homo sapiens Q7Z6I5 32296183
Intra
SMARCC1 Q92922 SPATA12 Homo sapiens Q7Z6I5 32296183
Intra
SMARCC1 Q92922 VGLL3 Homo sapiens A8MV65-2 32296183
Intra
SMARCC1 Q92922 VGLL3 Homo sapiens A8MV65-2 32296183
Intra
SMARCC1 Q92922 KRTAP6-2 Homo sapiens Q3LI66 32296183
Intra
SMARCC1 Q92922 KRTAP6-2 Homo sapiens Q3LI66 32296183
Intra
SMARCC1 Q92922 UFSP1 Homo sapiens Q6NVU6 32296183
Intra
SMARCC1 Q92922 UFSP1 Homo sapiens Q6NVU6 32296183
Intra
SMARCC1 Q92922 KRTAP6-1 Homo sapiens Q3LI64 32296183
Intra
SMARCC1 Q92922 KRTAP6-1 Homo sapiens Q3LI64 32296183
Intra
SMARCC1 Q92922 KRTAP19-2 Homo sapiens Q3LHN2 32296183
Intra
SMARCC1 Q92922 KRTAP19-2 Homo sapiens Q3LHN2 32296183
Intra
SMARCC1 Q92922 SLC15A2 Homo sapiens Q16348 32296183
Intra
SMARCC1 Q92922 SLC15A2 Homo sapiens Q16348 32296183
Intra
SMARCC1 Q92922 PPIP5K2 Homo sapiens O43314-2 32296183
Intra
SMARCC1 Q92922 PPIP5K2 Homo sapiens O43314-2 32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1 32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1 32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1 32296183
Intra
SMARCC1 Q92922 KRTAP7-1 Homo sapiens Q8IUC3 32296183
Intra
SMARCC1 Q92922 KRTAP7-1 Homo sapiens Q8IUC3 32296183
Intra
SMARCC1 Q92922 KRTAP21-2 Homo sapiens Q3LI59 32296183
Intra
SMARCC1 Q92922 KRTAP21-2 Homo sapiens Q3LI59 32296183
Intra
SMARCC1 Q92922 KRTAP6-3 Homo sapiens Q3LI67 32296183
Intra
SMARCC1 Q92922 KRTAP6-3 Homo sapiens Q3LI67 32296183
Intra
SMARCC1 Q92922 CARM1 Homo sapiens Q86X55 24434208
Intra
SMARCC1 Q92922 CARM1 Homo sapiens Q86X55 24434208
Intra
SMARCC1 Q92922 PTH1R Homo sapiens Q03431 32296183
Intra
SMARCC1 Q92922 PTH1R Homo sapiens Q03431 32296183
Intra
SMARCC1 Q92922 RELB Homo sapiens Q01201
TAP
14743216
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5 35271311
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5
TAP
24981860
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5 24421395
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5 24434208
Intra
SMARCC1 Q92922 GLRX3 Homo sapiens O76003 32296183
Intra
SMARCC1 Q92922 GLRX3 Homo sapiens O76003 32296183
Intra
SMARCC1 Q92922 CYSRT1 Homo sapiens A8MQ03 32296183
Intra
SMARCC1 Q92922 CYSRT1 Homo sapiens A8MQ03 32296183
Intra
SMARCC1 Q92922 KRTAP26-1 Homo sapiens Q6PEX3 32296183
Intra
SMARCC1 Q92922 KRTAP26-1 Homo sapiens Q6PEX3 32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6 32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6 32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6 32296183
Intra
SMARCC1 Q92922 TRIM42 Homo sapiens Q8IWZ5 32296183
Intra
SMARCC1 Q92922 TRIM42 Homo sapiens Q8IWZ5 32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4 32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4 32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4 32296183
Intra
SMARCC1 Q92922 PLSCR1 Homo sapiens O15162 25416956
Intra
SMARCC1 Q92922 PLSCR1 Homo sapiens O15162 25416956
Intra
SMARCC1 Q92922 OTX1 Homo sapiens P32242 25416956
Intra
SMARCC1 Q92922 OTX1 Homo sapiens P32242 25416956
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4 32296183
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4 32296183
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4 32296183
Intra
SMARCC1 Q92922 KRTAP3-2 Homo sapiens Q9BYR7 32296183
Intra
SMARCC1 Q92922 KRTAP3-2 Homo sapiens Q9BYR7 32296183
Intra
SMARCC1 Q92922 CFP Homo sapiens P27918 32296183
Intra
SMARCC1 Q92922 CFP Homo sapiens P27918 32296183
Intra
SMARCC1 Q92922 ASCL1 Homo sapiens P50553 36931659
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8 32296183
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8 32296183
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8 32296183
Cross: Cross-species interaction Intra: Intraspecies interaction

SMARCC1 Antibodies

Cat. No. Product Name Application Reactivity
HY-P81308 SMARCC1 Antibody (YA1046) WB Human
HY-P81308A SMARCC1 Antibody (YA1047) WB, ICC/IF, IP, FC Human, Rat
HY-P85564 SMARCC1 Antibody (YA5256) WB Human

Related Diseases

Diseases Alias
Congenital Hydrocephalus
  • Hydrocephalus

  • Hydrocephalus Adverse Event

  • Hydrocephalus, Nonsyndromic, Autosomal Recessive 1

  • Hydrocephalus In Newborn

  • Congenital Hydrocephaly

Neurilemmomatosis
  • Schwannomatosis

  • Neurofibromatosis Type 3

  • Nf3

  • Neurilemmomatosis Congenital Cutaneous

  • Neurinomatosis

  • Congenital Cutaneous Neurilemmomatosis

  • Multiple Neurilemmomas

  • Multiple Schwannomas

  • Neurilemmomatosis, Congenital Cutaneous

  • Schwannomatosis 1

  • Neurofibromatosis 3

  • Mixed Central And Peripheral Neurofibromatosis

  • Nf3 - [Neurofibromatosis Type 3]

Rhabdoid Cancer
  • Rhabdoid Tumor

  • Malignant Rhabdoid Tumor

  • Malignant Rhabdoid Tumour

  • Rhabdoid Sarcoma

  • Rhabdoid Tumor Predisposition Syndrome 1

  • Rhabdoid Tumor Predisposition Syndrome 2

  • Atypical Teratoid Rhabdoid Tumor

  • Brain Tumor, Posterior Fossa, Of Infancy, Familial

  • Atypical Teratoid/Rhabdoid Tumor

Kidney Rhabdoid Cancer
  • Rhabdoid Tumor Of The Kidney

  • Kidney Rhabdoid Tumor

  • Renal Rhabdoid Tumor

Clark-Baraitser Syndrome
  • CLABARS

  • Baraitser Syndrome

  • Autosomal Dominant Intellectual Disability 49

  • Mental Retardation, Autosomal Dominant 49, Formerly

  • Mrd49, Formerly

  • Intellectual Developmental Disorder, Autosomal Dominant 49

  • Autosomal Dominant Mental Retardation 49

  • Intellectual Disability, Tall Stature, Obesity, Macrocephaly And Typical Facial Features

  • Mrd49

  • Progeria Short Stature Pigmented Nevi

Autosomal Dominant Intellectual Developmental Disorder
  • Autosomal Dominant Mental Retardation

  • Autosomal Dominant Non-Syndromic Mental Retardation

  • Autosomal Dominant Non-Syndromic Intellectual Disability

  • Mental Retardation, Autosomal Dominant

Hydrocephalus
  • Hydrocephalus, Nonsyndromic, Autosomal Recessive

  • Hydrocephalus, X-Linked

  • Hydrocephalus Adverse Event

  • Hydrocephaly Nos

Ovarian Clear Cell Carcinoma
  • Clear-Cell Ovarian Carcinoma

Atypical Teratoid Rhabdoid Tumor
  • Rhabdoid Tumor Predisposition Syndrome

  • Rtps

  • Atypical Teratoid/Rhabdoid Tumor

  • Rhabdoid Predisposition Syndrome

  • Familial Posterior Fossa Brain Tumor Of Infancy

  • Familial Rhabdoid Tumor

  • At/Rt

  • Atypical Teratoid Rhabdoid Tumour

  • Atypical Teratoid/Rhabdoid Tumour

  • Rhabdoid Tumor Of The Cns

  • Rhabdoid Tumour Of The Cns

  • Familial Posterior Fossa Brain Tumor Syndrome

  • Hereditary Swi/Snf Deficiency Syndrome

  • Atrt

Coffin-Siris Syndrome 1
  • Coffin-Siris Syndrome

  • Fifth Digit Syndrome

  • Css

  • CSS1

  • Mrd12

  • Mental Retardation, Autosomal Dominant 12

  • Hhid

  • Dwarfism-Onychodysplasia

  • Hypertrichosis, Hyperkeratosis, Mental Retardation, And Distinctive Facial Features

  • Autosomal Dominant Mental Retardation 12

  • Short Stature-Onychodysplasia.

  • Intellectual Disability With Absent Fifth Fingernail And Terminal Phalanx

  • Mental Retardation With Hypoplastic Fifth Fingernails And Toenails

  • Short Stature-Onychodysplasia

  • Coffin-Siris Syndrome, Type 1

  • Mental Retardation, Autosomal Dominant, Type 12

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Felis catus SMARCC1 VGNC VGNC:65469
Macaca mulatta SMARCC1 VGNC VGNC:84075
Bos taurus SMARCC1 VGNC VGNC:58414
Canis familiaris SMARCC1 VGNC VGNC:46535
Rattus norvegicus SMARCC1 RGD RGD:1304850
Mus musculus SMARCC1 MGD MGI:1203524
Others SMARCC1 NCBI