CLNS1A - chloride nucleotide-sensitive channel 1A Gene
Also Known as CLCI; ICln; CLNS1B
Species: Homo sapiens
About CLNS1A
This gene has 12 transcripts (splice variants) and 239 orthologues. Ubiquitous expression in adrenal (RPKM 36.6), brain (RPKM 32.8) and 25 other tissues.
Summary
This gene encodes a protein that functions in multiple regulatory pathways. The encoded protein complexes with numerous cytosolic proteins and performs diverse functions including regulation of small nuclear ribonucleoprotein biosynthesis, platelet activation and cytoskeletal organization. The protein is also found associated with the plasma membrane where it functions as a chloride current regulator. Pseudogenes of this gene are found on chromosomes 1, 4 and 6. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2015]
CLNS1A Products (5)
| mRNA | Protein | Name |
|---|---|---|
| NM_001293.3 | NP_001284.1 | methylosome subunit pICln isoform a |
| NM_001311199.2 | NP_001298128.1 | methylosome subunit pICln isoform a |
| NM_001311200.2 | NP_001298129.1 | methylosome subunit pICln isoform b |
| NM_001311201.2 | NP_001298130.1 | methylosome subunit pICln isoform c |
| NM_001311202.2 | NP_001298131.1 | methylosome subunit pICln isoform d |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
11756452 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in spliceosomal snRNP assembly |
IDA
IDA: Inferred from direct assay
|
18984161 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in cytosol |
IDA
IDA: Inferred from direct assay
|
18984161 | GOA |
| part of methylosome |
IDA
IDA: Inferred from direct assay
|
11756452 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
21081503 | GOA |
| part of pICln-Sm protein complex |
IDA
IDA: Inferred from direct assay
|
18984161 | GOA |
CLNS1A Protein Structure
Voldacs: Regulator of volume decrease after cellular swelling (35 - 160)
- 0
- 100
- 200
- 237 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
methylosome subunit pICln |
|
CLNS1A Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
CLNS1A | P54105 | EPB41 | Homo sapiens | P11171-2 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | EPB41 | Homo sapiens | P11171-2 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | FRMD7 | Homo sapiens | Q6ZUT3 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | SNRPD2 | Homo sapiens | P62316 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | LSM2 | Homo sapiens | Q9Y333 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | LSM2 | Homo sapiens | Q9Y333 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | LSM3 | Homo sapiens | P62310 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | LSM3 | Homo sapiens | P62310 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | PRMT5 | Homo sapiens | O14744 | 11756452 | |
|
Intra
|
CLNS1A | P54105 | PRMT5 | Homo sapiens | O14744 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | PRMT5 | Homo sapiens | O14744 | 11756452 | |
|
Intra
|
CLNS1A | P54105 | PRMT5 | Homo sapiens | O14744 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | PRMT5 | Homo sapiens | O14744 | 22365833 | |
|
Intra
|
CLNS1A | P54105 | SNRPF | Homo sapiens | P62306 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPF | Homo sapiens | P62306 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPF | Homo sapiens | P62306 | 22365833 | |
|
Intra
|
CLNS1A | P54105 | SNRPF | Homo sapiens | P62306 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 22365833 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPD1 | Homo sapiens | P62314 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | SNRPB | Homo sapiens | P14678 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPB | Homo sapiens | P14678 | 22365833 | |
|
Intra
|
CLNS1A | P54105 | SNRPB | Homo sapiens | P14678 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPB | Homo sapiens | P14678 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD3 | Homo sapiens | P62318 | 22365833 | |
|
Intra
|
CLNS1A | P54105 | SNRPD3 | Homo sapiens | P62318 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPD3 | Homo sapiens | P62318 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD3 | Homo sapiens | P62318 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPD3 | Homo sapiens | P62318 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | LSM6 | Homo sapiens | P62312 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | LSM6 | Homo sapiens | P62312 | 25416956 | |
|
Intra
|
CLNS1A | P54105 | LSM6 | Homo sapiens | P62312 | 32296183 | |
|
Intra
|
CLNS1A | P54105 | LSM6 | Homo sapiens | P62312 | 35271311 | |
|
Intra
|
CLNS1A | P54105 | SNRPG | Homo sapiens | P62308 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPG | Homo sapiens | P62308 | 18984161 | |
|
Intra
|
CLNS1A | P54105 | SNRPG | Homo sapiens | P62308 | 32296183 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | CLNS1A | VGNC | VGNC:82000 |
| Macaca mulatta | CLNS1A | VGNC | VGNC:71261 |
| Bos taurus | CLNS1A | VGNC | VGNC:27455 |
| Mus musculus | CLNS1A | MGD | MGI:109638 |
| Rattus norvegicus | CLNS1A | RGD | RGD:61884 |
| Others | CLNS1A | NCBI |