TAF12 - TATA-box binding protein associated factor 12 Gene
Also Known as TAF2J; TAFII20
Species: Homo sapiens
About TAF12
This gene has 17 transcripts (splice variants) and 228 orthologues. Ubiquitous expression in testis (RPKM 9.9), lymph node (RPKM 8.4) and 25 other tissues.
Summary
Control of transcription by RNA polymerase II involves the basal transcription machinery which is a collection of proteins. These proteins with RNA polymerase II, assemble into complexes which are modulated by transactivator proteins that bind to cis-regulatory elements located adjacent to the transcription start site. Some modulators interact directly with the basal complex, whereas Others may act as bridging proteins linking transactivators to the basal transcription factors. Some of these associated factors are weakly attached while Others are tightly associated with TBP in the TFIID complex. Among the latter are the TAF proteins. Different TAFs are predicted to mediate the function of distinct transcriptional activators for a variety of gene promoters and RNA polymerases. TAF12 interacts directly with TBP as well as with TAF2I. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Sep 2008]
TAF12 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_001135218.2 | NP_001128690.1 | transcription initiation factor TFIID subunit 12 isoform 1 |
| NM_001410769.1 | NP_001397698.1 | transcription initiation factor TFIID subunit 12 isoform 2 |
| NM_005644.4 | NP_005635.1 | transcription initiation factor TFIID subunit 12 isoform 1 |
| Molecular Function GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| enables DNA binding |
IDA
IDA: Inferred from direct assay
|
15601843 | GOA |
| enables DNA-binding transcription factor binding |
IDA
IDA: Inferred from direct assay
|
17264123 | GOA |
| enables DNA-binding transcription factor binding |
IPI
IPI: Inferred from physical interaction
|
17264123 | GOA |
| contributes to RNA polymerase II general transcription initiation factor activity |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
7667268 | GOA |
| enables transcription coactivator activity |
IDA
IDA: Inferred from direct assay
|
11564863 | GOA |
| Biological Process GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| involved in DNA-templated transcription initiation |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in RNA polymerase II preinitiation complex assembly |
IPI
IPI: Inferred from physical interaction
|
27007846 | GOA |
| involved in mRNA transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in positive regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17264123 | GOA |
| involved in positive regulation of transcription initiation by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17884155 | GOA |
| involved in regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| involved in transcription initiation at RNA polymerase II promoter |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
| Cellular Component GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| part of SAGA complex |
IDA
IDA: Inferred from direct assay
|
9674425 | GOA |
| located in nucleus |
EXP
EXP: Inferred from Experiment
|
23332750 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
11564863 | GOA |
| part of transcription factor TFIID complex |
IDA
IDA: Inferred from direct assay
|
14580349 | GOA |
| part of transcription factor TFIID complex |
IPI
IPI: Inferred from physical interaction
|
23332750 | GOA |
| part of transcription factor TFTC complex |
IDA
IDA: Inferred from direct assay
|
9603525 | GOA |
TAF12 Protein Structure
TFIID_20kDa: Transcription initiation factor TFIID subunit A (59 - 126)
- 0
- 100
- 161 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
transcription initiation factor TFIID subunit 12 |
|
TAF12 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | Références |
|---|---|---|---|---|---|---|---|
|
Intra
|
TAF12 | Q16514 | PRKAR2B | Homo sapiens | Q6DHZ2 | 25416956 | |
|
Intra
|
TAF12 | Q16514 | PRKAR2B | Homo sapiens | Q6DHZ2 | 25416956 | |
|
Intra
|
TAF12 | Q16514 | TAF4 | Homo sapiens | O00268 | 33961781 | |
|
Intra
|
TAF12 | Q16514 | TAF4 | Homo sapiens | O00268 | 12237304 | |
|
Intra
|
TAF12 | Q16514 | TAF4 | Homo sapiens | O00268 | 35271311 | |
|
Intra
|
TAF12 | Q16514 | TAF1C | Homo sapiens | Q15572 | 17268553 | |
|
Intra
|
TAF12 | Q16514 | TBP | Homo sapiens | P20226 | 33961781 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Choroid Plexus Cancer |
|
|
| Atypical Choroid Plexus Papilloma |
|
|
| Cerebrovascular Benign Neoplasm |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | TAF12 | VGNC | VGNC:106512 |
| Felis catus | TAF12 | VGNC | VGNC:65925 |
| Bos taurus | TAF12 | VGNC | VGNC:97316 |
| Rattus norvegicus | TAF12 | RGD | RGD:1592841 |
| Mus musculus | TAF12 | MGD | MGI:1913714 |
| Others | TAF12 | NCBI |