TRIM3 - tripartite motif containing 3 Gene
Also Known as BERP; HAC1; RNF22; RNF97
Species: Homo sapiens
About TRIM3
This gene has 14 transcripts (splice variants), 266 orthologues and 80 paralogues. Ubiquitous expression in duodenum (RPKM 6.6), small intestine (RPKM 6.1) and 25 other tissues.
Summary
The protein encoded by this gene is a member of the tripartite motif (TRIM) family, also called the 'RING-B-box-coiled-coil' (RBCC) subgroup of RING finger proteins. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This protein localizes to cytoplasmic filaments. It is similar to a rat protein which is a specific partner for the tail domain of Myosin V, a class of myosins which are involved in the targeted transport of organelles. The rat protein can also interact with alpha-actinin-4. Thus it is suggested that this human protein may play a role in Myosin V-mediated cargo transport. Alternatively spliced transcript variants encoding the same isoform have been identified. [provided by RefSeq, Jul 2008]
TRIM3 Products (4)
| mRNA | Protein | Name |
|---|---|---|
| NM_001248006.2 | NP_001234935.1 | tripartite motif-containing protein 3 isoform 1 |
| NM_001248007.2 | NP_001234936.1 | tripartite motif-containing protein 3 isoform 2 |
| NM_006458.4 | NP_006449.2 | tripartite motif-containing protein 3 isoform 1 |
| NM_033278.4 | NP_150594.2 | tripartite motif-containing protein 3 isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables identical protein binding |
IPI
IPI: Inferred from physical interaction
|
32296183 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
19460345 | GOA |
| enables ubiquitin protein ligase activity |
IDA
IDA: Inferred from direct assay
|
32878999 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in neural precursor cell proliferation |
IMP
IMP: Inferred from mutant phenotype
|
38225354 | GOA |
| involved in positive regulation of toll-like receptor 3 signaling pathway |
IDA
IDA: Inferred from direct assay
|
32878999 | GOA |
| involved in protein K63-linked ubiquitination |
IDA
IDA: Inferred from direct assay
|
32878999 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| is active in Golgi apparatus |
IDA
IDA: Inferred from direct assay
|
32878999 | GOA |
TRIM3 Protein Structure
zf-C3HC4: Zinc finger, C3HC4 type (RING finger) (22 - 62)
zf-B_box: B-box zinc finger (113 - 150)
Filamin: Filamin/ABP280 repeat (321 - 415)
NHL: NHL repeat (486 - 513)
NHL: NHL repeat (533 - 560)
NHL: NHL repeat (577 - 602)
NHL: NHL repeat (622 - 649)
NHL: NHL repeat (669 - 696)
NHL: NHL repeat (713 - 737)
- 0
- 200
- 400
- 600
- 744 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
tripartite motif-containing protein 3 |
|
TRIM3 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
TRIM3 | O75382 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | KCTD7 | Homo sapiens | Q96MP8-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | KCTD7 | Homo sapiens | Q96MP8-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | KCTD7 | Homo sapiens | Q96MP8-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TEAD1 | Homo sapiens | P28347-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | USP32 | Homo sapiens | Q8NFA0-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | ROPN1 | Homo sapiens | Q9HAT0 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | MYO5B | Homo sapiens | Q9ULV0-2 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | UBE2E2 | Homo sapiens | Q96LR5 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TRIM2 | Homo sapiens | Q9C040 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | UBE2Z | Homo sapiens | Q9H832 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | CEP70 | Homo sapiens | Q8NHQ1 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | CEP70 | Homo sapiens | Q8NHQ1 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | CEP70 | Homo sapiens | Q8NHQ1 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | LNX1 | Homo sapiens | Q8TBB1 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | UBE2D1 | Homo sapiens | P51668 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | CSNK1E | Homo sapiens | P49674 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | ASL | Homo sapiens | P04424 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | ASL | Homo sapiens | P04424 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | ASL | Homo sapiens | P04424 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | CSNK1D | Homo sapiens | P48730 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TRIM21 | Homo sapiens | P19474 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TRIM21 | Homo sapiens | P19474 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TRIM21 | Homo sapiens | P19474 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | LRRC8E | Homo sapiens | Q6NSJ5 | 32296183 | |
|
Intra
|
TRIM3 | O75382 | TEAD2 | Homo sapiens | Q15562-2 | 32296183 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | TRIM3 | VGNC | VGNC:66533 |
| Macaca mulatta | TRIM3 | VGNC | VGNC:78549 |
| Rattus norvegicus | TRIM3 | RGD | RGD:70074 |
| Mus musculus | TRIM3 | MGD | MGI:1860040 |
| Canis familiaris | TRIM3 | VGNC | VGNC:47813 |
| Bos taurus | TRIM3 | VGNC | VGNC:36326 |
| Others | TRIM3 | NCBI |