KDM2A - lysine demethylase 2A Gene
Also Known as FBL7; CXXC8; FBL11; FBXL11; JHDM1A; LILINA
Species: Homo sapiens
About KDM2A
This gene has 15 transcripts (splice variants), 296 orthologues and 4 paralogues. Ubiquitous expression in testis (RPKM 25.2), bone marrow (RPKM 22.4) and 25 other tissues.
Summary
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein Ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class and, in addition to an F-box, contains at least six highly degenerated leucine-rich repeats. This family member plays a role in epigenetic silencing. It nucleates at CpG islands and specifically demethylates both mono- and di-methylated lysine-36 of histone H3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2012]
KDM2A Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001256405.2 | NP_001243334.1 | lysine-specific demethylase 2A isoform b |
| NM_012308.3 | NP_036440.1 | lysine-specific demethylase 2A isoform a |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables histone H3K36 demethylase activity |
IMP
IMP: Inferred from mutant phenotype
|
20417597 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
15070733 | GOA |
| enables unmethylated CpG binding |
IDA
IDA: Inferred from direct assay
|
29276034 | GOA |
| enables zinc ion binding |
IDA
IDA: Inferred from direct assay
|
29276034 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in circadian regulation of gene expression |
IMP
IMP: Inferred from mutant phenotype
|
26037310 | GOA |
| involved in double-strand break repair via nonhomologous end joining |
IMP
IMP: Inferred from mutant phenotype
|
21187428 | GOA |
| involved in negative regulation of transcription by competitive promoter binding |
IMP
IMP: Inferred from mutant phenotype
|
26037310 | GOA |
| involved in regulation of circadian rhythm |
IMP
IMP: Inferred from mutant phenotype
|
26037310 | GOA |
KDM2A Protein Structure
JmjC: JmjC domain, hydroxylase (199 - 299)
zf-CXXC: CXXC zinc finger domain (565 - 609)
F-box: F-box domain (896 - 934)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1162 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
lysine-specific demethylase 2A |
|
KDM2A Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P83067 | KDM2A Antibody (YA2812) | WB, IHC-F, IHC-P, ICC/IF, IP | Human, Mouse, Rat |
| HY-P83067A | KDM2A Antibody (YA2812)(PBS only) | WB, IHC-F, IHC-P, ICC/IF, IP | Human, Mouse, Rat |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Duodenum Adenoma |
|
|
| Ossifying Fibromyxoid Tumor |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Mus musculus | KDM2A | MGD | MGI:1354736 |
| Bos taurus | KDM2A | VGNC | VGNC:56269 |
| Macaca mulatta | KDM2A | VGNC | VGNC:73824 |
| Rattus norvegicus | KDM2A | RGD | RGD:1309419 |
| Canis familiaris | KDM2A | VGNC | VGNC:42320 |
| Felis catus | KDM2A | VGNC | VGNC:63069 |
| Others | KDM2A | NCBI |