SERF1B - small EDRK-rich factor 1B Gene
Also Known as h4F5; FAM2B; H4F5C
Species: Homo sapiens
Summary
This gene is part of a 500 kb inverted duplication on chromosome 5q13. This duplicated region contains at least four genes and repetitive elements which make it prone to rearrangements and deletions. The repetitiveness and complexity of the sequence have also caused difficulty in determining the organization of this genomic region. This gene is the centromeric copy which is identical to the telomeric copy. Alternatively spliced transcripts have been documented but it is unclear whether alternative splicing occurs for both the centromeric and telomeric copies of the gene. The gene encodes a protein of unknown function which bears low-level homology with the RNA-binding domain of matrin-cyclophilin, a protein which colocalizes with small nuclear ribonucleoproteins (snRNPs) and the SMN1 gene product. [provided by RefSeq, Jul 2008]
Broad expression in testis (RPKM 16.5), brain (RPKM 11.2) and 25 other tissues.
SERF1B Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001178087.2 | NP_001171558.1 | small EDRK-rich factor 1 isoform 1 |
| NM_022978.3 | NP_075267.1 | small EDRK-rich factor 1 isoform 2 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
22854022 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in amyloid fibril formation |
IMP
IMP: Inferred from mutant phenotype
|
22854022 | GOA |
| involved in protein destabilization |
IMP
IMP: Inferred from mutant phenotype
|
20723760 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in cytosol |
IMP
IMP: Inferred from mutant phenotype
|
31034892 | GOA |
| located in nucleus |
IMP
IMP: Inferred from mutant phenotype
|
31034892 | GOA |
| part of protein-containing complex |
IMP
IMP: Inferred from mutant phenotype
|
31034892 | GOA |
SERF1B Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
SERF1A | O75920 | ELOVL7 | Homo sapiens | A1L3X0 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ELOVL7 | Homo sapiens | A1L3X0 | 32296183 | |
|
Intra
|
SERF1A | O75920 | AQP6 | Homo sapiens | Q13520 | 32296183 | |
|
Intra
|
SERF1A | O75920 | AQP6 | Homo sapiens | Q13520 | 32296183 | |
|
Intra
|
SERF1A | O75920 | AQP6 | Homo sapiens | Q13520 | 32296183 | |
|
Intra
|
SERF1A | O75920 | GPR152 | Homo sapiens | Q8TDT2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | GPR152 | Homo sapiens | Q8TDT2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | GPR152 | Homo sapiens | Q8TDT2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CRB3 | Homo sapiens | Q9BUF7-2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CRB3 | Homo sapiens | Q9BUF7-2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CRB3 | Homo sapiens | Q9BUF7-2 | 32296183 | |
|
Intra
|
SERF1A | O75920 | RNASEK | Homo sapiens | Q6P5S7 | 32296183 | |
|
Intra
|
SERF1A | O75920 | RNASEK | Homo sapiens | Q6P5S7 | 32296183 | |
|
Intra
|
SERF1A | O75920 | RNASEK | Homo sapiens | Q6P5S7 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ELOVL4 | Homo sapiens | Q9GZR5 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ELOVL4 | Homo sapiens | Q9GZR5 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ELOVL4 | Homo sapiens | Q9GZR5 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CERS4 | Homo sapiens | Q9HA82 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CERS4 | Homo sapiens | Q9HA82 | 32296183 | |
|
Intra
|
SERF1A | O75920 | CERS4 | Homo sapiens | Q9HA82 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ABHD16A | Homo sapiens | O95870 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ABHD16A | Homo sapiens | O95870 | 32296183 | |
|
Intra
|
SERF1A | O75920 | ABHD16A | Homo sapiens | O95870 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TIMMDC1 | Homo sapiens | Q9NPL8 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TIMMDC1 | Homo sapiens | Q9NPL8 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TIMMDC1 | Homo sapiens | Q9NPL8 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMX2 | Homo sapiens | Q9Y320 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMX2 | Homo sapiens | Q9Y320 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMX2 | Homo sapiens | Q9Y320 | 32296183 | |
|
Intra
|
SERF1A | O75920 | REEP4 | Homo sapiens | Q9H6H4 | 32296183 | |
|
Intra
|
SERF1A | O75920 | REEP4 | Homo sapiens | Q9H6H4 | 32296183 | |
|
Intra
|
SERF1A | O75920 | REEP4 | Homo sapiens | Q9H6H4 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMEM14B | Homo sapiens | Q9NUH8 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMEM14B | Homo sapiens | Q9NUH8 | 32296183 | |
|
Intra
|
SERF1A | O75920 | TMEM14B | Homo sapiens | Q9NUH8 | 32296183 |