HOXC5 - homeobox C5 Gene
Also Known as CP11; HOX3; HOX3D
Species: Homo sapiens
About HOXC5
This gene has 1 transcript (splice variant), 194 orthologues and 42 paralogues. Biased expression in ovary (RPKM 1.6), kidney (RPKM 1.3) and 12 other tissues.
Summary
This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene, HOXC5, is one of several homeobox HOXC genes located in a cluster on chromosome 12. Three genes, HOXC5, HOXC4 and HOXC6, share a 5' non-coding exon. Transcripts may include the shared exon spliced to the gene-specific exons, or they may include only the gene-specific exons. Two alternatively spliced variants have been described for HOXC5. The transcript variant which includes the shared exon apparently doesn't encode a protein. The protein-coding transcript variant contains gene-specific exons only. [provided by RefSeq, Jul 2008]
HOXC5 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_018953.4 | NP_061826.1 | homeobox protein Hox-C5 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
32296183 | GOA |
HOXC5 Protein Structure
Homeobox: Homeobox domain (156 - 212)
- 0
- 100
- 200
- 222 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
homeobox protein Hox-C5 |
|
HOXC5 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
HOXC5 | Q00444 | CTBP2 | Homo sapiens | P56545-3 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | CTBP2 | Homo sapiens | P56545-3 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX4 | Homo sapiens | Q9BYU1 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX4 | Homo sapiens | Q9BYU1 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX4 | Homo sapiens | Q9BYU1 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | POU6F2 | Homo sapiens | P78424 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | POU6F2 | Homo sapiens | P78424 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX1 | Homo sapiens | P40424 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX1 | Homo sapiens | P40424 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | POLR2G | Homo sapiens | P62487 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | POLR2G | Homo sapiens | P62487 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | POLR2G | Homo sapiens | P62487 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX2 | Homo sapiens | P40425 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | PBX2 | Homo sapiens | P40425 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | ZBTB16 | Homo sapiens | Q05516 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | ZBTB16 | Homo sapiens | Q05516 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | ZBTB16 | Homo sapiens | Q05516 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | GORASP2 | Homo sapiens | Q9H8Y8 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | GORASP2 | Homo sapiens | Q9H8Y8 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | GORASP2 | Homo sapiens | Q9H8Y8 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | DVL3 | Homo sapiens | Q92997 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | DVL3 | Homo sapiens | Q92997 | 32296183 | |
|
Intra
|
HOXC5 | Q00444 | DVL3 | Homo sapiens | Q92997 | 32296183 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Lymphoma, Non-Hodgkin, Familial |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | HOXC5 | RGD | RGD:1307584 |
| Bos taurus | HOXC5 | VGNC | VGNC:56208 |
| Mus musculus | HOXC5 | MGD | MGI:96196 |
| Others | HOXC5 | NCBI |