DDX21 - DExD-box helicase 21 Gene
Also Known as RH; GUA; GURDB; II/Gu; RH II/Gu; RH-II/GU; gu-alpha; RH-II/GuA
Species: Homo sapiens
About DDX21
This gene has 12 transcripts (splice variants), 233 orthologues and 38 paralogues. Ubiquitous expression in bone marrow (RPKM 38.2), appendix (RPKM 33.3) and 25 other tissues.
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which is an antigen recognized by autoimmune antibodies from a patient with watermelon stomach disease. This protein unwinds double-stranded RNA, folds single-stranded RNA, and may play important roles in ribosomal RNA biogenesis, RNA editing, RNA transport, and general transcription. [provided by RefSeq, Jul 2008]
DDX21 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_001256910.2 | NP_001243839.1 | nucleolar RNA helicase 2 isoform 2 |
| NM_001410932.1 | NP_001397861.1 | nucleolar RNA helicase 2 isoform 3 |
| NM_004728.4 | NP_004719.2 | nucleolar RNA helicase 2 isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables 7SK snRNA binding |
IDA
IDA: Inferred from direct assay
|
25470060 | GOA |
| enables RNA helicase activity |
IDA
IDA: Inferred from direct assay
|
9461305 | GOA |
| enables RNA helicase activity |
IMP
IMP: Inferred from mutant phenotype
|
25470060 | GOA |
| enables miRNA binding |
IDA
IDA: Inferred from direct assay
|
28431233 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
15034300 | GOA |
| enables rRNA binding |
IDA
IDA: Inferred from direct assay
|
25470060 | GOA |
| enables snoRNA binding |
IDA
IDA: Inferred from direct assay
|
25470060 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in R-loop processing |
IDA
IDA: Inferred from direct assay
|
28790157 | GOA |
| involved in positive regulation of transcription by RNA polymerase III |
IDA
IDA: Inferred from direct assay
|
16603771 | GOA |
| involved in transcription by RNA polymerase II |
IMP
IMP: Inferred from mutant phenotype
|
25470060 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of B-WICH complex |
IDA
IDA: Inferred from direct assay
|
16603771 | GOA |
| located in nucleolus |
IDA
IDA: Inferred from direct assay
|
28790157 | GOA |
| located in nucleoplasm |
IDA
IDA: Inferred from direct assay
|
28790157 | GOA |
DDX21 Protein Structure
DEAD: DEAD/DEAH box helicase (211 - 380)
Helicase_C: Helicase conserved C-terminal domain (464 - 532)
GUCT: GUCT (NUC152) domain (620 - 715)
- 0
- 200
- 400
- 600
- 783 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
nucleolar RNA helicase 2 |
|
DDX21 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
DDX21 | Q9NR30 | CDK9 | Homo sapiens | P50750 | 25470060 | |
|
Intra
|
DDX21 | Q9NR30 | CDK9 | Homo sapiens | P50750 | 35271311 | |
|
Intra
|
DDX21 | Q9NR30 | LARP7 | Homo sapiens | Q4G0J3 | 33961781 | |
|
Intra
|
DDX21 | Q9NR30 | LARP7 | Homo sapiens | Q4G0J3 | 25470060 | |
|
Intra
|
DDX21 | Q9NR30 | LARP7 | Homo sapiens | Q4G0J3 | 35271311 | |
|
Cross
|
DDX21 | Q9NR30 | N | SARS-CoV-2 | P0DTC9 | 35107372 | |
|
Cross
|
DDX21 | Q9NR30 | N | SARS-CoV-2 | P0DTC9 | 35107372 | |
|
Intra
|
DDX21 | Q9NR30 | HNRNPA1 | Homo sapiens | P09651 | 35271311 | |
|
Intra
|
DDX21 | Q9NR30 | HNRNPC | Homo sapiens | P07910 | 30021884 | |
|
Intra
|
DDX21 | Q9NR30 | HNRNPC | Homo sapiens | P07910 | 35271311 | |
|
Intra
|
DDX21 | Q9NR30 | HNRNPC | Homo sapiens | P07910 | 15034300 | |
|
Intra
|
DDX21 | Q9NR30 | KPNA3 | Homo sapiens | O00505 | 33961781 | |
|
Intra
|
DDX21 | Q9NR30 | KPNA3 | Homo sapiens | O00505 | 25416956 | |
|
Intra
|
DDX21 | Q9NR30 | KPNA3 | Homo sapiens | O00505 | 25416956 | |
|
Intra
|
DDX21 | Q9NR30 | KPNA3 | Homo sapiens | O00505 | 25416956 | |
|
Intra
|
DDX21 | Q9NR30 | KPNA3 | Homo sapiens | O00505 | 35271311 | |
|
Intra
|
DDX21 | Q9NR30 | H1-2 | Homo sapiens | P16403 | 30021884 | |
|
Intra
|
DDX21 | Q9NR30 | MAPT | Homo sapiens | P10636 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | MAPT | Homo sapiens | P10636 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | MAPT | Homo sapiens | P10636 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | SRPK2 | Homo sapiens | P78362 | 33961781 | |
|
Intra
|
DDX21 | Q9NR30 | SRPK2 | Homo sapiens | P78362 | 23602568 | |
|
Intra
|
DDX21 | Q9NR30 | TERF2 | Homo sapiens | Q15554 | 21044950 | |
|
Intra
|
DDX21 | Q9NR30 | LITAF | Homo sapiens | Q99732 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | LITAF | Homo sapiens | Q99732 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | LITAF | Homo sapiens | Q99732 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | CARF | Homo sapiens | Q8N187 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | CARF | Homo sapiens | Q8N187 | 32814053 | |
|
Intra
|
DDX21 | Q9NR30 | CARF | Homo sapiens | Q8N187 | 32814053 |
DDX21 Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P82918 | DDX21 Antibody (YA2663) | WB, ICC/IF | Human |
| HY-P82918A | DDX21 Antibody (YA2663)(PBS only) | WB, ICC/IF | Human |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Stomach Disease |
|
|
| Gastric Antral Vascular Ectasia |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Canis familiaris | DDX21 | VGNC | VGNC:39849 |
| Mus musculus | DDX21 | MGD | MGI:1860494 |
| Bos taurus | DDX21 | VGNC | VGNC:97259 |
| Rattus norvegicus | DDX21 | RGD | RGD:1307306 |
| Others | DDX21 | NCBI |