PCBP1 - poly(rC) binding protein 1 Gene

Also Known as HNRPX; HNRPE1; hnRNP-X; HEL-S-85; hnRNP-E1

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 5093

About PCBP1

Cytogenetic location: 2p13.3 Genomic coordinates (GRCh38): 2:70,087,477-70,089,203 (from NCBI)

This gene has 1 transcript (splice variant), 99 orthologues, 12 paralogues and is associated with 43 phenotypes.

Summary

This intronless gene is thought to have been generated by retrotransposition of a fully processed PCBP-2 mRNA. This gene and PCBP-2 have paralogues (PCBP3 and PCBP4) which are thought to have arisen as a result of duplication events of entire genes. The protein encoded by this gene appears to be multifunctional. It along with PCBP-2 and hnRNPK corresponds to the major cellular poly(rC)-binding protein. It contains three K-homologous (KH) domains which may be involved in RNA binding. This encoded protein together with PCBP-2 also functions as translational coactivators of poliovirus RNA via a sequence-specific interaction with stem-loop IV of the IRES and promote poliovirus RNA replication by binding to its 5'-terminal cloverleaf structure. It has also been implicated in translational control of the 15-lipoxygenase mRNA, human Papillomavirus type 16 L2 mRNA, and hepatitis A virus RNA. The encoded protein is also suggested to play a part in formation of a sequence-specific alpha-globin mRNP complex which is associated with alpha-globin mRNA stability. [provided by RefSeq, Jul 2008]

PCBP1 Products (1)

mRNA Protein Name
NM_006196.4 NP_006187.2 poly(rC)-binding protein 1
Molecular Function GO Annotation Evidence References Source
enables RNA binding IDA
IDA: Inferred from direct assay
7556077 GOA
enables mRNA binding IDA
IDA: Inferred from direct assay
14722620 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
16713569 GOA
enables single-stranded DNA binding IDA
IDA: Inferred from direct assay
8152927 GOA
Biological Process GO Annotation Evidence References Source
involved in viral RNA genome replication IDA
IDA: Inferred from direct assay
12414943 GOA
Cellular Component GO Annotation Evidence References Source
located in cytoplasm IDA
IDA: Inferred from direct assay
25468996 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

PCBP1 Protein Structure

KH_1

KH_1: KH domain (15 - 75)

KH_1

KH_1: KH domain (99 - 162)

KH_1

KH_1: KH domain (282 - 343)

  • 0
  • 100
  • 200
  • 300
  • 356 a.a.
Protein Preferred Names Protein Names

poly(rC)-binding protein 1

  • alpha-CP1

PCBP1 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Intra
PCBP1 Q15365 PUF60 Homo sapiens Q9UHX1 16713569
Intra
PCBP1 Q15365 IGF2BP3 Homo sapiens O00425 32296183
Intra
PCBP1 Q15365 IGF2BP3 Homo sapiens O00425 32296183
Intra
PCBP1 Q15365 RBM39 Homo sapiens Q14498-2 17389360
Intra
PCBP1 Q15365 TLE5 Homo sapiens Q08117-2 32296183
Intra
PCBP1 Q15365 TLE5 Homo sapiens Q08117-2 32296183
Intra
PCBP1 Q15365 RBFOX2 Homo sapiens O43251-10 32296183
Intra
PCBP1 Q15365 RBFOX2 Homo sapiens O43251-10 32296183
Intra
PCBP1 Q15365 RBPMS2 Homo sapiens Q6ZRY4 32296183
Intra
PCBP1 Q15365 RBPMS2 Homo sapiens Q6ZRY4 32296183
Intra
PCBP1 Q15365 RBPMS2 Homo sapiens Q6ZRY4 32296183
Intra
PCBP1 Q15365 RBPMS2 Homo sapiens Q6ZRY4 32296183
Intra
PCBP1 Q15365 PAK1 Homo sapiens Q13153 17389360
Intra
PCBP1 Q15365 PAK1 Homo sapiens Q13153 17389360
Intra
PCBP1 Q15365 PAK1 Homo sapiens Q13153-1 17389360
Intra
PCBP1 Q15365 THAP11 Homo sapiens Q96EK4 22673507
Intra
PCBP1 Q15365 THAP11 Homo sapiens Q96EK4
IF
22673507
Intra
PCBP1 Q15365 THAP11 Homo sapiens Q96EK4 22673507
Intra
PCBP1 Q15365 RBM3 Homo sapiens P98179 32296183
Intra
PCBP1 Q15365 RBM3 Homo sapiens P98179 32296183
Intra
PCBP1 Q15365 PTBP1 Homo sapiens P26599 16713569
Intra
PCBP1 Q15365 PTBP1 Homo sapiens P26599 16713569
Intra
PCBP1 Q15365 RBM39 Homo sapiens Q14498 17389360
Intra
PCBP1 Q15365 PPIG Homo sapiens Q13427
Y2H
22365833
Intra
PCBP1 Q15365 PRPF8 Homo sapiens Q6P2Q9
Y2H
22365833
Intra
PCBP1 Q15365 PRPF8 Homo sapiens Q6P2Q9 22365833
Intra
PCBP1 Q15365 SNRPA Homo sapiens P09012 25416956
Intra
PCBP1 Q15365 SNRPA Homo sapiens P09012 32296183
Intra
PCBP1 Q15365 SNRPA Homo sapiens P09012 31515488
Intra
PCBP1 Q15365 SNRPA Homo sapiens P09012 32296183
Intra
PCBP1 Q15365 WBP11 Homo sapiens Q9Y2W2 16713569
Intra
PCBP1 Q15365 WBP11 Homo sapiens Q9Y2W2
Y2H
16713569
Intra
PCBP1 Q15365 TSC22D4 Homo sapiens Q9Y3Q8
Y2H
16713569
Intra
PCBP1 Q15365 TSC22D4 Homo sapiens Q9Y3Q8 16713569
Intra
PCBP1 Q15365 KLF1 Homo sapiens Q13351 32296183
Intra
PCBP1 Q15365 KLF1 Homo sapiens Q13351 32296183
Intra
PCBP1 Q15365 QKI Homo sapiens Q96PU8 16713569
Intra
PCBP1 Q15365 PCBP2 Homo sapiens Q15366
Y2H
16713569
Intra
PCBP1 Q15365 PCBP2 Homo sapiens Q15366 16713569
Cross
PCBP1 Q15365 PA Influenza A virus Q67020 21994455
Cross
PCBP1 Q15365 GAMMAHV.ORF34 Murid herpesvirus 4 O41951 22028648
Cross
PCBP1 Q15365 GAMMAHV.ORF34 Murid herpesvirus 4 O41951 22028648
Cross
PCBP1 Q15365 GAMMAHV.ORF34 Murid herpesvirus 4 O41951
IF
22028648
Cross
PCBP1 Q15365 GAMMAHV.ORF34 Murid herpesvirus 4 O41951 22028648
Cross: Cross-species interaction Intra: Intraspecies interaction

Recombinant PCBP1 Proteins

Cat. No. Product Name Accession Purity
HY-P74649 PCBP1 Protein, Human (His) NP_006187.2 (D2-S356) ≥ 90%, as determined by reducing SDS-PAGE.

PCBP1 Antibodies

Cat. No. Product Name Application Reactivity
HY-P83182 PCBP1 Antibody (YA2927) WB, IP Human, Mouse, Rat

Related Diseases

Diseases Alias
Deafness, Autosomal Recessive 17
  • DFNB17

  • Autosomal Recessive Nonsyndromic Deafness 17

  • Autosomal Recessive Deafness 17

Burkitt Lymphoma
  • Burkitt'S Lymphoma

  • BL

  • Burkitt Lymphoma, Somatic

  • Burkitt Lymphoma/Leukaemia

  • Burkitt'S Tumor

  • Burkitt'S Tumor Or Lymphoma

  • Malignant Lymphoma, Burkitt'S Type

  • Small Non-Cleaved Cell Lymphoma, Burkitt'S Type

  • Small Non-Cleaved Cell Lymphoma

  • Burkitt Tumor

  • Burkitts Lymphoma

  • Lymphoma, Small Noncleaved-Cell

  • Burkitt Tumour

  • Diffuse Small Noncleaved Malignant Burkitt Lymphoma

  • Malignant Burkitt Lymphoma

  • “Burkitt-Like” Lymphoma

  • Undifferentiated Burkitt Lymphoma

  • Small Noncleaved Cell Burkitt Lymphoma

Aceruloplasminemia
  • Cerebellar Ataxia

  • Hypoceruloplasminemia

  • Hemosiderosis, Systemic, Due To Aceruloplasminemia

  • Familial Apoceruloplasmin Deficiency

  • Hereditary Ceruloplasmin Deficiency

  • Deficiency Of Ferroxidase

  • Hypoceruloplasminemia, Hereditary

  • Ceruloplasmin Deficiency

  • Systemic Hemosiderosis Due To Aceruloplasminemia

  • ACERULOP

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Rattus norvegicus PCBP1 RGD RGD:1561319
Macaca mulatta PCBP1 VGNC VGNC:106194
Felis catus PCBP1 VGNC VGNC:81140
Mus musculus PCBP1 MGD MGI:1345635
Others PCBP1 NCBI