Unraveling Pyroptosis: Mechanisms and Detection Methods

Pyroptosis is a lytic and inflammatory form of programmed cell death (PCD). It is characterized by cell swelling, membrane perforation, and the release of cellular contents. Pyroptosis plays a key role in host defense, cancer immunotherapy, and inflammatory diseases. Pyroptosis exhibits a dual biological role: on the one hand, inducing pyroptosis in cancer cells can suppress tumor growth; on the other hand, its proinflammatory nature may lead to excessive inflammation and promote tumor growth. These properties make pyroptosis a compelling focus for biomedical research. They also make it a promising strategy for cancer therapy by activating strong antitumor immunity.

In this issue, we provide a practical guide to the fundamental processes, mechanisms, and detection methods of pyroptosis, aiming to support research on inflammatory and immunogenic forms of cell death.

  •   The Fundamental Process of Pyroptosis
  •   Different Mechanisms of Pyroptosis
  •   Detection Methods for Pyroptosis

The Fundamental Process of Pyroptosis

Pyroptosis is a form of PCD triggered by the activation of inflammasomes. Its primary function is to induce a robust inflammatory response, thereby protecting the host against microbial infections. Pyroptosis is initiated by inflammatory caspases with cleavage activity (Caspase-1, -4, -5, -11), and by cleaving the execution protein Gasdermin-D (GSDMD), it releases its N-terminal fragment on the cell membrane to form a pore, ultimately causing the cell to undergo lysis and death[1].

The process of pyroptosis can be broadly divided into four sequential steps: initiation by danger signals and inflammasome assembly, caspase activation, Gasdermin-mediated membrane perforation, and amplification of inflammation leading to cell lysis.

Figure 1. Cytosolic LPS sensing by the non-canonical inflammasome[2].

1. Signal triggering and inflammasome assembly: Danger signals released upon pathogen invasion (e.g., bacterial toxins) or cellular damage (e.g., ATP, DNA) activate intracellular pattern recognition receptors (PRRs) such as NLRP3, AIM2. These receptors recruit adaptor proteins (e.g., ASC) and pro-caspase precursors (e.g., pro-caspase-1/4/5/11), forming a multi-protein complex known as the "inflammasome".

2. Caspase activation: Upon inflammasome assembly, caspases (e.g., caspase-1/4/5/11) are activated through self-cleavage. These activated caspases serve as the key "molecular switches" regulating pyroptosis.

Figure 2. Schematic overview of the conserved structure and regulatory residues of the Gasdermin (GSDM) proteins[3].

3. Gasdermin cleavage and membrane perforation: Activated caspases specifically cleave Gasdermin family proteins (e.g., GSDMD), releasing their N-terminal domains. These domains oligomerize on the cell membrane to form pores, causing osmotic imbalance and the leakage of cellular contents.

4. Inflammation amplification and cell death: Following membrane perforation, intracellular pro-inflammatory factors (e.g., IL-1β, IL-18) are released into the extracellular space along with other cellular contents, recruiting immune cells and amplifying the inflammatory response. The cell eventually swells and ruptures, completing the pyroptosis process.

To highlight the unique features of pyroptosis, we compared it with other forms of PCD. Table 1 summarizes the morphological, biochemical, and molecular characteristics of major PCD types, illustrating how pyroptosis is distinct yet interconnected with other cell death pathways.

Table 1. Classifications of PCD and their distinctive characteristics[4-6].
Types of PCD Morphological characteristics Biochemical characteristics Major pathways Key genes
Ferroptosis

● Mitochondrial shrinkage with increased membrane density;

● Reduction or disappearance of mitochondrial cristae;

● Cell membrane rupture

● Accumulation of Fe²⁺;

● Lipid peroxidation;

● Increased levels of MDA and ROS;

● Decreased GSH content

● System Xc⁻-GPX4 pathway;

● Iron metabolism pathway;

● Lipid metabolism pathway;

● Mevalonate (MVA) pathway

● GPX4, SLC7A11;

● ACSL4, ALOXs;

● TFRC

Cuproptosis

● Mitochondrial shrinkage;

● Endoplasmic reticulum (ER) damage;

● Chromatin fragmentation;

● Cell membrane rupture

● Copper accumulation;

● Lipoylated protein aggregation;

● Increased levels of ROS/α-KG;

● Decreased Fe-S protein levels

● Abnormal aggregation of TCA cycle proteins;

● Copper overload mediated by FDX1

● FDX1;

● DLAT;

● LIAS

Apoptosis

● Cell shrinkage and chromatin condensation;

● Nuclear volume reduction and nuclear fragmentation;

● Formation of apoptotic bodies

● DNA fragmentation;

● Caspase activation

● Death receptor (extrinsic) pathway;

● Mitochondrial (intrinsic) pathway;

● Perforin/granzyme pathway

● Caspase family;

● Bcl-2 family;

● Death receptors (DRs)

Necroptosis

● Plasma membrane rupture with release of cellular contents;

● Cytoplasmic and organelle swelling;

● Chromatin condensation

● Decreased ATP levels

● TNF-R1 pathway;

● RIP1/RIP3-MLKL pathway;

● PKC-MAPK-AP-1 pathway;

● ROS-related metabolic regulatory pathways

● RIP1, RIP3

Autophagy

● Formation of double-membrane autophagosomes, including macroautophagy, microautophagy, and chaperone-mediated autophagy

● Increased lysosomal activity

● mTOR pathway;

● Beclin-1 pathway;

● p53 signaling pathway

● ATG5, ATG7;

● LC3;

● Beclin-1;

● DRAM3;

● TFEB

Pyroptosis

● Intact nucleus with cell swelling and deformation;

● Plasma membrane rupture and release of cellular contents;

● Formation of pyroptotic bodies

● Increased expression of GSDM-B/C/D/E, Caspases 1/3/4/5/8/11, and NLRP3;

● Elevated release of IL-1β, IL-18, HMGB1, ATP, and LDH

● Caspase-1-mediated canonical pathway;

● Caspase-11/4/5-mediated non-canonical pathway

● Initiator factors: Caspase-1/3/4/5/11;

● Executioner proteins: GSDMB/C/D/E

Different Mechanisms of Pyroptosis

Although the fundamental process of pyroptosis involves inflammasome assembly, caspase activity, and Gasdermin-mediated membrane perforation, different stimuli or cell types can engage distinct caspases or granzymes, resulting in multiple specific execution pathways.

Cell pyroptosis mainly occurs via four pathways: the canonical pathway mediated by Caspase-1, the non-canonical pathway mediated by Caspase-4/5/11, the cross-talk pyroptosis pathway mediated by Caspase-3/8, and the granzyme-mediated pathway mediated by GzmA/GzmB. Among them, Caspase-1 must be activated through cleavage by the inflammasome before it can cleave GSDMD[7].

Figure 3. Schematic illustration of the different pyroptosis pathways[7].
Canonical Inflammasome Pathway

In the canonical pathway, stimuli such as viruses, bacteria, toxins, ATP or reactive oxygen species (ROS) activate the inflammasome, which in turn activates caspase-1. Active caspase-1 cleaves the precursors of IL-1β and IL-18, as well as GSDMD, releasing the N-terminal domain (GSDMD-NT). GSDMD-NT forms membrane pores, leading to inflammatory responses and pyroptosis. Canonical inflammasome-mediated pyroptosis primarily occurs in immune cells and serves as a host defend mechanism against pathogen infections[1][8].

Non-Canonical Inflammasome Pathway

The non-canonical pathway is initially independent of inflammasomes. Upon stimulation by lipopolysaccharide (LPS), activated Caspase-4/5/11 cleaves the GSDMD protein, causing GSDMD-N to punch holes in the cell membrane and inducing pyroptosis. Additionally, the N-terminal fragment of GSDMD activates the NLRP3 inflammasome, further promoting Caspase-1 activation and maturation of IL-1β and IL-18[1][8].

Apoptotic Caspases-Mediated Pathway

Caspase-3, a classical apoptotic marker, specifically cleaves GSDME, leading to mitochondrial damage, apoptosis, and pyroptosis[9].

Caspase-8 mediates apoptosis and necroptosis via RIPK1/MLKL. However, when the Yersinia effector YopJ of Yersinia and its mimic 5z7 inhibit RIPK1 and activate TLR4, Caspase-8 mediates pyroptosis instead. TLR4 recruits the RIPK1/Caspase-8/FADD complex to Rag-Ragulator, activating Caspase-8 and cleaving GSDMD. Additionally, α-ketoglutarate-induced ROS can recruit Caspase-8 via the death receptor DR6, leading to GSDMC activation and pyroptosis[10].

Granzymes-Mediated Pathway

Granzyme A (GZMA) is the most abundant serine protease in cytotoxic lymphocytes and is a key mediator of cell death. In this pathway, GZMA or GZMB derived from cytotoxic lymphocytes can respectively cleave GSDMB or GSDME, forming membrane pores and inducing pyroptosis. GzmB also rapidly activates caspase-3 in target cells, subsequently activating GSDME and promoting extensive pyroptosis. Both GzmA and GzmB enter target cells via perforin: GzmA hydrolyzes GSDMB, while GzmB directly activates GSDME[7][11].

Table 2. Some representative small molecules modulating pyroptosis pathways.
Product Name Mechanisms Bioactivity
LPS NLRP3/GSDMD activator induce pyroptosis, apoptosis, necroptosis and autophagy
Pyridoxine Caspase-3/GSDME activator induce pyroptosis and apoptosis
Cisplatin Caspase-3/GSDME activator induce pyroptosis, ferroptosis, apoptosis, and necroptosis
4-hydroxytamoxifen GSDMD activator induce pyroptosis, apoptosis, necroptosis and autophagy
CCCP GSDMD activator induce pyroptosis, ferroptosis, apoptosis, and necroptosis
D-Mannose GSDME inhibitor inhibit pyroptosis and apoptosis
Ganglioside GM1 NF-κB/NLRP3 inhibitor inhibit pyroptosis and apoptosis

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Detection Methods for Pyroptosis

Understanding the diverse molecular pathways of pyroptosis provides a foundation for monitoring this form of cell death. To study pyroptosis in vitro and in vivo, researchers use various methods to detect and quantify pyroptotic cell death, typically focusing on two aspects: cell phenotype and biological function.

Table 3. Methods for monitoring pyroptosis[12].
Category Indicators Method
Changes in cell morphology Cell swelling, membrane blebbing and rupture, bubble-like protrusions • Microscopy analysis
• TEM
• SEM
• Automated live cell imager
GSDM-mediated pore formation • liposome leakage method
• AFM
Monitoring cell death Cell viability • MTT/MTS assay
DNA fragmentation • TUNEL method
Staining status Annexin V/PI staining, SYTOX/7-ADD/EtBr/TO-PRO3 staining • Microscopy analysis, Flow cytometry
Molecular biomarkers Cleavage of GSDM family (GSDMB/C/D/E) • Western blot
• Immunohistochemistry
• Immunofluorescence
• Q-PCR
GSDM–Flag
Activation of Caspase-1/3/4/5/11
GzmA and GzmB
Released substances: IL-1β, IL-18, HMGB1, ATP, LDH
Other methods The dynamic process of pyroptosis in vivo • Two-photon imaging technology

TEM, transmission electron microscopy; SEM, scanning electron microscope; GSDM, gasdermin; AFM, atomic force microscopy; GzmA, granzyme A; GzmB, granzyme B.

Detection of the Phenotype of Cell Pyroptosis

To capture pyroptosis at the cellular level, researchers first examine characteristic morphological changes using microscopy and staining techniques. Figure 4 illustrates representative phenotypic features observed during pyroptosis.

Figure 4. Representative results of pyroptosis phenotype detection[12].

(A-B) Cellular morphological features during pyroptosis, apoptosis, and necroptosis;(C) Representative microscopic images of SCC7 cells after Cisplatin (DDP) (HY-17394) treatment;(D) Representative transmission electron microscopy images of SCC7 cells treated with DDP.

During the early stage, apoptotic cells swell and expand, forming bubble-like protrusions on the membrane. In the later stage, pores appear in the cell membrane, compromising its integrity, and the cells collapse and rupture. At this point, the nucleus remains centrally located. As morphology changes, the nucleus shrinks and the DNA fragmentation occurs[12].

Morphological changes can be observed using optical microscopy or scanning/transmission electron microscopy. Membrane integrity can also be assessed with fluorescence staining techniques: the plasma membrane of pyroptotic cells becomes more permeable, allowing nucleic acid dyes that normally cannot cross the cell membrane to enter the cell and stain the cell nucleus, emitting corresponding fluorescence.

GSDM proteins also induce mitochondria damage during pyroptosis. Activated GSDM binds to mitochondrial cardiolipin, forming mitochondrial pores that disrupt the double-membrane structure, leading to ROS production, altered oxidative phosphorylation (OXPHOS), release of cytotoxic mediators, and mitochondrial autophagy. Notably, mitochondrial damage precedes plasma membrane rupture, allowing the early stage of pyroptosis to be detected through mitochondrial phenotypic analysis[13].

Functional Detection of Cell Pyroptosis

Phenotypic changes in cells provide early visual cues of pyroptosis, while functional assays capture the underlying molecular events.

Figure 5. Downregulation of both mRNA and protein levels of pyroptosis-related genes[14].

(A and B) Relative mRNA levels of NLRP3, caspase-1, GSDMD, GSDMD-C, IL-1β, IL-18 were measured by qRT-PCR; (C and D) Protein levels of NLRP3, caspase-1 p45/p20, GSDMD, GSDMD-C, IL-1β p31/ p17, and IL-18 was measured by Western blot.

Expression of Pyroptosis-Related Cell Markers

The GSDM protein and inflammatory factors in pyroptotic cells are activated and cleaved, leading to increased mRNA expression and elevated levels of their active protein forms. when pyroptosis is inhibited, these indicators correspondingly decrease.

• Common indicators: GSDM-B/C/D/E (N-GSDM, C-GSDM), Caspase-1/3/4/5/8/11, NLRP3 inflammasome, and increased levels of mature IL-1β (p17) and IL-18.

Significant Intracellular Events during Pyroptosis

Activated Caspases proteins cleave GSDM family members and the precursors of IL-1β/IL-18, generating the pore-forming GSDM-N fragment and the mature form of IL-1β/IL-18.

• Common indicators: Detection of N-GSDM and C-GSDM fragments, as well as active/mature IL-1β/IL-18.

Release of Intracellular Substances

During pyroptosis, rupture of the plasma membrane causes intracellular components to leak into the extracellular environment. For instance, lactate dehydrogenase (LDH) is released upon membrane disruption. Measuring soluble extracellular biomarkers such as LDH in culture supernatants or plasma helps determine whether pyroptosis has occurred.

• Common indicators: Increased extracellular levels of HMGB1, ATP, LDH, ROS, and mature IL-1β/IL-18.

Figure 6. Analysis of extracellular markers released during CCCP (HY-100941)/FeSO4-induced pyroptosis in melanoma cells[11].
Summary

Pyroptosis is a form of programmed cell death that relies on immune processes involved in antimicrobial defense and inflammation. It can be executed through canonical and non-canonical pathways mediated by caspases. It can be detected by both phenotypic changes, such as cell swelling and membrane perforation, and functional markers, including caspase activation and release of inflammatory mediators. Understanding pyroptosis provides valuable insights for research in cancer, inflammatory diseases, and immunotherapy. Further development of precise strategies to modulate pyroptosis and deeper exploration of its conserved mechanisms across species will be essential for advancing translational applications[15].

Recommended Products for Phenotypic Detection of Pyroptosis
Product Name Cat. No. Feature Ex/Em (nm) Application
Hoechst 33342 HY-15559 Blue 356/452 Cell nucleus dyes of living cells
Propidium Iodide/PI HY-D0915 Red 535/615 Non-living cell nucleus dyes
7-Aminoactinomycin D HY-D1020 Red 549/648 Non-living cell DNA dye
CFDA-SE HY-D0938 Green 485/515 Live cell proliferation tracer dye
DiO HY-D0969 Green 485/501 The membrane dyes of living cells
YO-PRO-1 HY-D0918 Green 485/501 Non-living cell DNA dye
One Step TUNEL Apoptosis Detection Kit (FITC) HY-K1078 Green 488/525 Normal cells: No fluorescence Pyroptotic cells: Green fluorescence
Annexin V-FITC/PI Apoptosis Detection Kit HY-K1073 Green/Red FITC: 488/525 PI: 535/615 Normal cells: No fluorescence Pyroptosis cells: Green fluorescence + Red fluorescence

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Recommended Products for Functional Detection of Pyroptosis
Product Name Cat. No. Application Category
DFNA5/GSDME Antibody (YA398) HY-P80697 WB, IP Cell Markers
GSDMD Antibody (YA5502) HY-P85810 WB, ICC/IF, ELISA
IL-1 beta Antibody (YA345) HY-P80503 WB, ICC/IF, IHC-P, FC
IL-18 Antibody (YA344) HY-P80721 WB, IHC-P
Cytotoxicity LDH Assay Kit HY-K1090 Detect the release of LDH; Intracellular Substances
ATP Assay Kit HY-K0314 Detect intracellular ATP content; applicable to cells, tissues and other biological samples.
Cell-ATP Viability Detection Kit HY-K0302 Detect the intracellular ATP content; it can quantitatively measure ATP and reflect the number of living cells as well as cell vitality.
Viability/Cytotoxicity Assay Kit for Live & Dead Cells (Calcein/PI) HY-K1094 At the same time, dual fluorescence staining was performed on both living and dead cells for the detection of cell activity and cell toxicity.
ROS Assay Kit HY-K0320 Based on DCFH-DA, the activity of reactive oxygen species is detected, and a positive control reagent for reactive oxygen species is provided.

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  • The Fundamental Process of Pyroptosis  
  • Different Mechanisms of Pyroptosis  
  • Detection Methods for Pyroptosis  

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