SDCBP2 - syndecan binding protein 2 Gene
Also Known as ST2; ST-2; SITAC; SITAC18
Species: Homo sapiens
About SDCBP2
This gene has 6 transcripts (splice variants), 210 orthologues and 4 paralogues. Biased expression in duodenum (RPKM 54.3), small intestine (RPKM 53.5) and 8 other tissues.
Summary
The protein encoded by this gene contains two class II PDZ domains. PDZ domains facilitate protein-protein interactions by binding to the cytoplasmic C-terminus of transmembrane proteins, and PDZ-containing proteins mediate cell signaling and the organization of protein complexes. The encoded protein binds to phosphatidylinositol 4, 5-bisphosphate (PIP2) and plays a role in nuclear PIP2 organization and cell division. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Read-through transcription also exists between this gene and the upstream FKBP1A (FK506 binding protein 1A, 12kDa) gene, as represented in GeneID:100528031. [provided by RefSeq, Sep 2011]
SDCBP2 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_001199784.2 | NP_001186713.1 | syntenin-2 isoform a |
| NM_015685.6 | NP_056500.2 | syntenin-2 isoform b |
| NM_080489.5 | NP_536737.3 | syntenin-2 isoform a |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables identical protein binding |
IPI
IPI: Inferred from physical interaction
|
25416956 | GOA |
| enables phosphatidylinositol-4,5-bisphosphate binding |
IDA
IDA: Inferred from direct assay
|
15961997 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
11102519 | GOA |
| enables protein heterodimerization activity |
IPI
IPI: Inferred from physical interaction
|
11152476 | GOA |
| enables protein homodimerization activity |
IDA
IDA: Inferred from direct assay
|
11152476 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in cell population proliferation |
IMP
IMP: Inferred from mutant phenotype
|
15961997 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
11152476 | GOA |
| located in nuclear speck |
IDA
IDA: Inferred from direct assay
|
15961997 | GOA |
| located in nucleolus |
IDA
IDA: Inferred from direct assay
|
15961997 | GOA |
| located in plasma membrane |
IDA
IDA: Inferred from direct assay
|
15961997 | GOA |
SDCBP2 Protein Structure
PDZ: PDZ domain (Also known as DHR or GLGF) (109 - 184)
PDZ: PDZ domain (Also known as DHR or GLGF) (193 - 263)
- 0
- 100
- 200
- 292 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
syntenin-2 |
|
SDCBP2 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
SDCBP2 | Q9H190 | FAM9B | Homo sapiens | Q8IZU0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM9B | Homo sapiens | Q8IZU0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | rnps1 | Homo sapiens | D3DU92 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | rnps1 | Homo sapiens | D3DU92 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | NKAPD1 | Homo sapiens | Q6ZUT1-2 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | NKAPD1 | Homo sapiens | Q6ZUT1-2 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | TNP1 | Homo sapiens | P09430 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM133A | Homo sapiens | Q8N9E0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM133A | Homo sapiens | Q8N9E0 | 27107012 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM133A | Homo sapiens | Q8N9E0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM133A | Homo sapiens | Q8N9E0 | 27107012 | |
|
Intra
|
SDCBP2 | Q9H190 | SREK1IP1 | Homo sapiens | Q8N9Q2 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | LGALS14 | Homo sapiens | Q8TCE9 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | LGALS14 | Homo sapiens | Q8TCE9 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ARF4 | Homo sapiens | P18085 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | TCP11L1 | Homo sapiens | Q9NUJ3 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | YTHDC1 | Homo sapiens | Q96MU7 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | RPL22 | Homo sapiens | P35268 | 27107012 | |
|
Intra
|
SDCBP2 | Q9H190 | NKAPD1 | Homo sapiens | Q6ZUT1 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | PRPF40A | Homo sapiens | O75400-2 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | PRPF40A | Homo sapiens | O75400-2 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC10 | Homo sapiens | Q8TBK6 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC10 | Homo sapiens | Q8TBK6 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZRSR2 | Homo sapiens | Q15696 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | NPM2 | Homo sapiens | Q86SE8 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | NPM2 | Homo sapiens | Q86SE8 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | LYAR | Homo sapiens | Q9NX58 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | LYAR | Homo sapiens | Q9NX58 | 31515488 | |
|
Intra
|
SDCBP2 | Q9H190 | LYAR | Homo sapiens | Q9NX58 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | CRCT1 | Homo sapiens | Q9UGL9 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | TM4SF1 | Homo sapiens | P30408 | 11102519 | |
|
Intra
|
SDCBP2 | Q9H190 | TM4SF1 | Homo sapiens | P30408 | 11102519 | |
|
Intra
|
SDCBP2 | Q9H190 | ADAP1 | Homo sapiens | O75689 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ADAP1 | Homo sapiens | O75689 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | LGALS2 | Homo sapiens | P05162 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | NFU1 | Homo sapiens | Q9UMS0 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | PHC1 | Homo sapiens | P78364 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | FBXO28 | Homo sapiens | Q9NVF7 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | FBXO28 | Homo sapiens | Q9NVF7 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | TIFA | Homo sapiens | Q96CG3 | 16189514 | |
|
Intra
|
SDCBP2 | Q9H190 | TIFA | Homo sapiens | Q96CG3 | 27107012 | |
|
Intra
|
SDCBP2 | Q9H190 | PRR13 | Homo sapiens | Q9NZ81 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | PRR13 | Homo sapiens | Q9NZ81 | 16189514 | |
|
Intra
|
SDCBP2 | Q9H190 | PRR13 | Homo sapiens | Q9NZ81 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC17 | Homo sapiens | Q9NP64 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC17 | Homo sapiens | Q9NP64 | 32296183 | |
|
Intra
|
SDCBP2 | Q9H190 | CT45A3 | Homo sapiens | Q8NHU0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC17 | Homo sapiens | Q9NP64 | 16189514 | |
|
Intra
|
SDCBP2 | Q9H190 | CT45A3 | Homo sapiens | Q8NHU0 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | ZCCHC17 | Homo sapiens | Q9NP64 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | CT45A3 | Homo sapiens | Q8NHU0 | 21516116 | |
|
Intra
|
SDCBP2 | Q9H190 | MMTAG2 | Homo sapiens | Q9BU76 | 16189514 | |
|
Intra
|
SDCBP2 | Q9H190 | ZNF581 | Homo sapiens | Q9P0T4 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | EIF1AD | Homo sapiens | Q8N9N8 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | EIF1AD | Homo sapiens | Q8N9N8 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | FAM13C | Homo sapiens | Q8NE31 | 25416956 | |
|
Intra
|
SDCBP2 | Q9H190 | CT45A5 | Homo sapiens | Q6NSH3 | 25416956 | |
|
Cross
|
SDCBP2 | Q9H190 | Tgfa | Rattus norvegicus | P01134 | 11102519 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Lissencephaly 9 With Complex Brainstem Malformation |
|
|
| Epidermodysplasia Verruciformis 1 |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | SDCBP2 | VGNC | VGNC:64947 |
| Macaca mulatta | SDCBP2 | VGNC | VGNC:77017 |
| Canis familiaris | SDCBP2 | VGNC | VGNC:45945 |
| Mus musculus | SDCBP2 | MGD | MGI:2385156 |
| Rattus norvegicus | SDCBP2 | RGD | RGD:1307709 |
| Bos taurus | SDCBP2 | VGNC | VGNC:34383 |
| Others | SDCBP2 | NCBI |