Polθ-IN-11
Polθ-IN-11 is an orally active DNA polymerase θ (Polθ) ATPase inhibitor with an IC50 of 4.3 nM against human targets. Polθ-IN-11 activates the cGAS-STING pathway. Polθ-IN-11 upregulates the expression of PD-L1 in HR-deficient cancer cells. Polθ-IN-11 acts synergistically with PARP inhibition in HR-deficient cancer cells and in vivo xenograft models. Polθ-IN-11 can be used in studies related to HR-deficient cancers.
For research use only. We do not sell to patients.
- CAS No.: 3082173-75-6
- Formula: C24H18FN5O3Se
- Molecular Weight:522.39
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
All DNA/RNA Synthesis Isoforms
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Biological Activity
Description
IC50 & Target
[1]|
Human pol θ 4.3 nM (IC50) |
TBK1 |
STAT1 |
In Vitro
Polθ-IN-11 (XL-20) (60 min) potently inhibits purified Polθ ATPase activity with an IC50 of 4.3 nM[1].
Polθ-IN-11 (up to 80 μM; 7 days) potently inhibits the growth of HR-deficient MDA-MB-436, HCT116, and SW48 cells with IC50 values of 8.1 μM, 16.5 μM, and 17.2 μM respectively, and shows minimal activity in HR-proficient MDA-MB-231 cells (IC50 >80 μM)[1].
Polθ-IN-11 (5-20 μM; 9 days) inhibits colony formation of MDA-MB-436 cells in a concentration-dependent manner[1].
Polθ-IN-11 (5-20 μM; 7 days) induces apoptosis in MDA-MB-436 cells in vitro in a concentration-dependent manner[1].
Polθ-IN-11 (5-20 μM; 7 days) induces concentration-dependent DNA double-strand break accumulation in MDA-MB-436 cells, as measured by γH2AX expression[1].
Polθ-IN-11 (5-20 μM; 24 h) inhibits S-phase DNA synthesis in MDA-MB-436 cells in vitro in a concentration-dependent manner[1].
Polθ-IN-11 (up to 10 μM) shows weak inhibition of the hERG potassium channel[1].
Polθ-IN-11 (5-40 μM; 7 days) exhibits synergistic antiproliferative activity with Olaparib (HY-10162) in MDA-MB-436 cells, supporting a combination therapeutic strategy[1].
Polθ-IN-11 (10 μM; 9-16 h) activates the cGAS-STING pathway in MDA-MB-436 cells, increasing phosphorylation of TBK1 and STAT1 and upregulating type I interferon-related genes and PD-L1, with stronger activity than AB25583 (HY-162859)[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:BRCA1-deficient MDA-MB-436 breast cancer cells
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Concentration:5, 10, 20 μM
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Incubation Time:9 days
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Result:Inhibited colony formation in a concentration-dependent manner; at 20 μM, reduced relative colony formation to ~0.1.
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Cell Line:BRCA1-deficient MDA-MB-436 breast cancer cells
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Concentration:5, 10, 20 μM
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Incubation Time:24 h
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Result:Inhibited S-phase DNA synthesis in a concentration-dependent manner; at 20 μM, reduced the percentage of EdU-positive cells.
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Cell Line:BRCA1-deficient MDA-MB-436 breast cancer cells
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Concentration:5, 10, 20 μM
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Incubation Time:7 days
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Result:Induced cell apoptosis in a concentration-dependent manner; at 20 μM, resulted in 17.7% apoptosis.
Parmacokinetics
| Species | Dose | Route | C0 | AUC0-t | AUC0-∞ | T1/2 | Vd | CL | MRT0-∞ | Cmax | Tmax | Vd/F | CL/F | F |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rat[1] | 1 mg/kg | i.v. | 5047.5 ng/mL | 18622.7 ng·h/mL | 19488.0 ng·h/mL | 4.5 h | 0.4 L/kg | 0.06 L/h/kg | 5.2 h | / | / | / | / | / |
| Rat[1] | 10 mg/kg | i.g. | / | 256805.6 ng·h/mL | 267456.2 ng·h/mL | 5.1 h | / | / | 7.3 h | 29816.6 ng/mL | 2.3 h | 0.3 L/kg | 0.04 L/h/kg | 137.9 % |
In Vivo
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:BALB/C nude (female, 6-week-old, 18-20 g, subcutaneous xenograft of BRCA1-deficient human MDA-MB-436 breast cancer cells)[1]
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Dosage:20 mg/kg (monotherapy); 20 mg/kg + 30 mg/kg olaparib (combination)
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Administration:p.o.; daily; 12 days
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Result:Achieved a tumor growth inhibition (TGI) of 43.7%.
Increased γH2AX expression in tumor tissues compared to controls.
Showed no appreciable body weight loss.
Showed no significant drug-related toxicity via H&E staining of heart, liver, spleen, lung, and kidney.
Achieved a tumor growth inhibition (TGI) of 64% when combined with olaparib.
Increased γH2AX expression in tumor tissues to a greater extent than monotherapy compared to controls.
Chemical Information
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CAS No. 3082173-75-6
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Molecular Weight 522.39
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Formula C24H18FN5O3Se
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SMILES
COC1=CC=CC(F)=C1C2=C(C=NC(C)=C2)C(NC3=NN=C([Se]3)COC4=CC=C(C=C4)C#N)=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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RNA extraction experimental
By lysing cells, releasing RNA, and removing impurities such as proteins and DNA, high-purity RNA products are finally obtained. The commonly used traditional method is the guanidine isothiocyanate/phenol/chloroform method (Trizol), which is suitable for a variety of animal materials including animal tissues, microorganisms, cultured cells, etc., and most plant materials.
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Cell Cytotoxicity Assay
Cytotoxicity assays are usually based on the assessment of cell membrane damage, which can also be indirectly detected by measuring cell viability. Detection methods include MTT assay, CKK-8 assay, LDH assay and ATP assay, etc.
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Patient-Derived Xenograft (PDX)
Patient-derived xenograft (PDX) models are generated by engrafting primary human tumor tissue directly into immunodeficient mice, allowing in vivo propagation of patient tumor biology without initial in vitro adaptation. These models are used to preserve key histopathological and molecular characteristics of the original tumor and enable assessment of tumor growth dynamics and therapeutic response in a living organism. The biological readout is tumor engraftment and subsequent growth in the murine host, which reflects the ability of human tumor cells to survive, vascularize, and expand in an immunocompromised microenvironment.
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Splenic/Portal-Vein Liver Metastasis Xenograft
Splenic and portal-vein liver metastasis xenograft models deliver tumor cells into the portal circulation so that cells reach the liver first and form hepatic metastatic lesions; splenic injection uses the spleen as an access route to the portal system, while direct portal-vein injection introduces cells into the portal vein without requiring splenectomy. The assay detects liver colonization, intrahepatic tumor growth, tumor distribution, treatment response, survival, and liver-metastasis microenvironment changes; readouts include bioluminescence or fluorescence imaging, gross liver nodule counts, liver weight or tumor burden, histology, and survival.
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Subcutaneous Cell-Line-Derived Xenograft
Subcutaneous cell-line-derived xenograft (CDX) models are established by implanting cultured human cancer cell lines into immunodeficient mice, where the injected cells form localized tumors that can be monitored in vivo as a measure of tumorigenic potential, growth kinetics, and treatment response. These models are widely used in oncology research because they allow reproducible tumor formation and enable comparative assessment of tumor growth between different cell lines or genetic manipulations in a controlled in vivo microenvironment. Subcutaneous implantation of cancer cells in immunodeficient mice is a standard approach for evaluating tumor growth behavior and therapeutic response across multiple cancer types, including prostate, esophageal, pancreatic, and colon cancer models.
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Orthotopic Cell-Line Xenograft
Orthotopic cell-line xenograft models involve implantation of human cancer cell lines into the anatomically corresponding organ of immunodeficient mice to reproduce tumor growth within a native microenvironment, enabling more clinically relevant tumor behavior compared with subcutaneous models. These models are widely used because orthotopic placement better recapitulates tumor progression, including invasion and metastatic spread, which are often underrepresented in heterotopic implantation systems. Compared with conventional xenografts, orthotopic implantation is described as more technically complex but provides improved simulation of tumor-microenvironment interactions and metastatic behavior, making it particularly valuable for translational oncology research. Surgical orthotopic implantation approaches have been emphasized as enabling faithful reproduction of clinical cancer features, including metastasis and disease progression patterns that align with the tumor’s organ of origi
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Intraperitoneal/Peritoneal Dissemination Xenograft
Intraperitoneal (IP) or peritoneal dissemination xenograft models are based on the introduction of human cancer cells into the peritoneal cavity of immunodeficient mice, where they attach to peritoneal surfaces, form multicellular aggregates or spheroids, and progressively generate disseminated tumor nodules that mimic advanced peritoneal metastatic disease. These models are widely used to study ovarian cancer progression, tumor-microenvironment interactions, and intraperitoneal therapeutic responses, often incorporating bioluminescence or fluorescence imaging to longitudinally monitor tumor burden in vivo. The biological principle relies on the capacity of tumor cells such as SKOV3 or related ovarian carcinoma lines to survive in suspension, aggregate within ascites-like fluid, adhere to mesothelial surfaces, and invade peritoneal organs, thereby recapitulating human peritoneal carcinomatosis patterns observed in advanced disease.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)