LL-K9-3
Based on 1 Customer Validation
LL-K9-3 is a selective CDK9-cyclin T1 HyT degrader, with DC50 values of 0.662 μM and 0.589 μM for CDK9 and Cyclin T1, respectively. LL-K9-3 lacks an E3 ligand moiety and induces polyubiquitination and proteasome-mediated synchronous degradation of CDK9 and cyclin T1 via a hydrophobic tag-mediated mechanism. LL-K9-3 downregulates the protein levels of androgen receptor (AR) and c-Myc, and exhibits antiproliferative and pro-apoptotic (apoptosis) activity in prostate cancer cells. LL-K9-3 can be used in studies related to prostate cancer.
(Pink: CDK9/cyclinT1 ligand (HY-10008); Blue: hydrophobic tag ligand (HY-W093149); Black: linker).
For research use only. We do not sell to patients.
- Purity : 98.90%
- CAS No.: 2809353-52-2
- Formula: C31H49N5O6S3
- Molecular Weight:683.95
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Storage:Powder -20°C, 3 years ; In solvent -80°C, 6 months , -20°C, 1 month
Biological Activity
Description
IC50 & Target
[1]|
CDK9 662 nM (DC50) |
cyclin T1 589 nM (DC50) |
Cellular Effect
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Cell Line
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Type | Value | Description | References |
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| CWR22R | IC50 |
0.095 μM
Compound: LL-K9-3
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Antiproliferative activity against human 22Rv1 cells assessed as reduction in cell viability measured after 5 days by CellTiter-Glo assay
Antiproliferative activity against human 22Rv1 cells assessed as reduction in cell viability measured after 5 days by CellTiter-Glo assay
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[PMID: 35925880] |
In Vitro
LL-K9-3 (3 μM; 1-48 h) induces synchronous, time-dependent degradation of CDK9 and Cyclin T1 in 22RV1 cells, with a significant reduction starting at 5-7 h and near-complete depletion observed by 48 h[1].
LL-K9-3 (5 days) potently inhibits the proliferation of 22RV1 cells, with IC50 values of 95 nM (Ref. 1) and 224.85 nM (Ref. 2)[1][2].
LL-K9-3 (100-400 nM; 14 days) potently inhibits colony formation of 22RV1 cells at nanomolar concentrations[1].
LL-K9-3 (0.3-1 μM; 24 h) inhibits CDK9 and AR downstream signaling pathways in 22RV1 cells, including reducing the levels of cMyc, MCL-1, AR and AR target proteins[1].
LL-K9-3 (2 μM; 24 h) inhibits MYC- and AR-mediated oncogenic transcriptional programs in 22RV1 cells[1].
LL-K9-3 (0.3-1 μM; 24 h) induces G1-phase cell cycle arrest and significant apoptosis in 22RV1 cells[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:22RV1
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Concentration:100, 200, 400 nM
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Incubation Time:14 days
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Result:Inhibited colony formation of 22RV1 cells.
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Cell Line:22RV1
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Concentration:0.3 and 1 μM
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Incubation Time:24 h
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Result:Induced cell apoptosis.
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Cell Line:22RV1
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Concentration:0.3 and 1 μM
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Incubation Time:24 h
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Result:Induced G1-phase cell cycle arrest.
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Cell Line:22RV1
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Concentration:0.3 and 1 μM
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Incubation Time:24 h
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Result:Caused a pronounced decrease in phospho-Rpb1 CTD (Ser2) levels, indicating inhibition of CDK9 downstream signaling.
Reduced MCL-1, full-length AR, AR splice variant ARV7, NKX3-1, and KLK3 levels.
Chemical Information
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CAS No. 2809353-52-2
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Appearance Solid
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Molecular Weight 683.95
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Formula C31H49N5O6S3
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Color White to off-white
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SMILES
O=S(CCNC(CO[C@H]1[C@@H](CC[C@H](C1)C)C(C)C)=O)(N2CCC(CC2)C(NC3=NC=C(SCC4=NC=C(C(C)(C)C)O4)S3)=O)=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Powder -20°C 3 years In solvent -80°C 6 months -20°C 1 month
Protocols
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Apoptosis
Apoptosis, also called programmed cell death, is generally characterized by distinct morphological characteristics.
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TUNEL staining for apoptotic DNA fragmentation
TUNEL staining detects DNA strand breaks by using terminal deoxynucleotidyl transferase to add labeled nucleotides to exposed 3′-OH DNA termini, generating either microscopic staining in fixed cells or tissue sections, or fluorescence/cytometric signal in cell suspensions. TUNEL positivity reflects DNA fragmentation but should not be interpreted alone as definitive apoptosis, because TUNEL can also label necrotic, autolytic, mechanically damaged, or DNA-repair-associated DNA breaks.
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Annexin V plus membrane-impermeant dye apoptosis staining
Annexin V-based apoptosis assays rely on the detection of phosphatidylserine (PS) externalization from the inner leaflet of the plasma membrane to the outer leaflet, an early biochemical hallmark of apoptosis. Fluorescently labeled Annexin V binds PS in a calcium-dependent manner, enabling identification of early apoptotic cells by flow cytometry or fluorescence microscopy. When combined with a membrane-impermeant DNA-binding dye (e. g. , propidium iodide), this approach allows discrimination between viable (Annexin V−/dye−), early apoptotic (Annexin V+/dye−), and late apoptotic or necrotic (Annexin V+/dye+) cell populations by assessing membrane integrity and PS exposure.
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Research Protocol for Endocrine Diseases
Endocrine diseases often arise from disrupted hormone production, hormone signaling, or target-tissue responsiveness; for diabetes-focused endocrine disease models, insulin signaling regulates glucose uptake, hepatic glucose output, lipid metabolism, and β-cell compensation. Type 2 diabetes develops through interacting defects in insulin resistance, β-cell dysfunction, adipose inflammation, hepatic glucose overproduction, altered incretin signaling, and ectopic lipid metabolism. A major unresolved question is whether endocrine dysfunction is driven primarily by target-tissue insulin resistance, intrinsic β-cell failure, immune/inflammatory stress, or combined multi-organ failure that differs by disease stage.
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Apoptosis Solutions
Apoptosis is a regulated, generally non-lytic cell-death pathway that removes unwanted, damaged, infected, or abnormal cells through coordinated morphological changes, caspase activation, DNA fragmentation, and membrane remodeling. The intrinsic apoptosis pathway is controlled mainly by mitochondrial outer membrane permeabilization, BCL-2 family proteins, cytochrome c release, apoptosome formation, caspase-9 activation, and downstream executioner caspase-3/7 activation. The extrinsic apoptosis pathway is initiated by death receptors such as Fas, TNFR, and TRAIL receptors, which recruit adaptor proteins and activate caspase-8 before engaging executioner caspases or mitochondrial amplification through BID cleavage. Apoptosis is linked to many phenotypes, including cancer cell killing, tissue homeostasis, immune regulation, neurodegeneration, infection response, and treatment-induced cytotoxicity; unresolved questions include how apoptosis interacts with necroptosis, pyroptosis, ferroptos
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Cell Viability Determination by MTT Colorimetric Assay
The following protocol uses the MTT colorimetric assay as a classic literature-established method for assessing cell viability/metabolic activity in cultured mammalian cells. MTT[3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] is reduced by metabolically active cells to a colored formazan product; the amount of formazan is quantified spectrophotometrically and provides an indirect measure of metabolically active viable cells. Importantly, MTT reduction reflects cellular oxidoreductase/metabolic activity rather than an absolute direct count of living cells, so changes in cellular metabolism can alter the signal independently of cell number.
Purity & Documentation
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Data Sheet (270 KB)
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SDS (252 KB)
- English - EN (252 KB)
- Français - FR (252 KB)
- Deutsch - DE (252 KB)
- Norwegian - NO (252 KB)
- Español - ES (252 KB)
- Swedish - SV (252 KB)
- Italian - IT (252 KB)
- Korean - KR (252 KB)
- Portuguese - PT (252 KB)
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Handling Instructions (2659 KB)
References
[1]. Li J, et al. Discovery of Small-Molecule Degraders of the CDK9-Cyclin T1 Complex for Targeting Transcriptional Addiction in Prostate Cancer. Journal of medicinal chemistry. 2022 Aug 25;65(16):11034-11057. [Content Brief]
[2]. Lin R, et al. Discovery of HyT-Based Degraders of CDK9-Cyclin T1 Complex. Chemistry & biodiversity. 2023 Aug;20(8):e202300769. [Content Brief]
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)