PP-048
PP-048 is a selective dual inhibitor of Polθ/PARP1, with IC50 values of 4.9 nM and 6.8 nM for the Polθ helicase/ATPase domain and PARP1, respectively. PP-048 impairs the compensatory DNA repair capacity of homologous recombination-deficient cells by simultaneously inhibiting the DNA repair functions associated with Polθ and PARP1, thereby exacerbating DNA double-strand damage and inducing apoptosis. PP-048 exhibits more potent selective antiproliferative activity against HR-deficient cancer cells. PP-048 can be used in studies related to Polθ/PARP1 dual-target inhibition, synthetic lethality, DNA damage repair, and HR-deficient triple-negative breast cancer.
For research use only. We do not sell to patients.
- Formula: C37H33ClN10O3S
- Molecular Weight:733.24
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
All DNA/RNA Synthesis Isoforms
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Biological Activity
Description
IC50 & Target
[1]|
PARP1 6.8 nM (IC50) |
Polθ 4.9 nM (IC50) |
PARP2 1542 nM (IC50) |
PARP3 3340 nM (IC50) |
PARP5A 8266 nM (IC50) |
PARP5B 7986 nM (IC50) |
Cellular Effect
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Cell Line
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Type | Value | Description | References |
|---|---|---|---|---|
| MDA-MB-436 | IC50 |
0.07 μM
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Antiproliferative activity against BRCA1-deficient MDA-MB-436 cells assessed by CCK-8 assay after 7 days of incubation.
Antiproliferative activity against BRCA1-deficient MDA-MB-436 cells assessed by CCK-8 assay after 7 days of incubation.
|
acs.jmedchem.6c01400 |
| HCT-116 | IC50 |
5.0 μM
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Antiproliferative activity against BRCA2-knockout HCT116 cells assessed by CCK-8 assay after 7 days of incubation.
Antiproliferative activity against BRCA2-knockout HCT116 cells assessed by CCK-8 assay after 7 days of incubation.
|
acs.jmedchem.6c01400 |
| MDA-MB-231 | IC50 |
68.4 μM
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Antiproliferative activity against BRCA-proficient MDA-MB-231 cells assessed by CCK-8 assay after 7 days of incubation.
Antiproliferative activity against BRCA-proficient MDA-MB-231 cells assessed by CCK-8 assay after 7 days of incubation.
|
acs.jmedchem.6c01400 |
In Vitro
PP-048 inhibits the ATPase activity of the recombinant human Polθ helicase domain, with an IC50 of 4.9 nM[1].
PP-048 (10 nM-100 nM; 60 min) inhibits the enzymatic activity of full-length recombinant human PARP1, with an IC50 of 6.8 nM[1].
PP-048 (10 nM-100 μM; 1 h) exhibits a selectivity for PARP1 that is more than 226-fold higher than that for PARP2, PARP3, PARP5a, PARP5b, and PARP7, with IC50 values against these corresponding off-target isoforms of 1542 nM, 3340 nM, 8266 nM, 7986 nM, and >100000 nM, respectively[1].
PP-048 (5 μM; 2 h) simultaneously binds to PARP1 and Polθ in MDA-MB-436 cells and enhances their thermal stability, confirming its dual-target binding property in living HR-deficient cancer cells[1].
PP-048 (1.0 μM; 0-45 min) exhibits excellent metabolic stability in human liver microsomes, with a half-life of 254.47 min and an intrinsic clearance of 6.30 mL/min/kg[1].
PP-048 (1.0 μM; 0-60 min) exhibits excellent metabolic stability in rat liver microsomes, with a half-life of 347.22 min and an intrinsic clearance of 4.62 mL/min/kg[1].
PP-048 (10 μM; 120 min) exhibits low passive permeability across Caco-2 cell monolayers, with an efflux ratio as high as 75.83, indicating that PP-048 is a potential P-gp substrate[1].
PP-048 (0.5 μM; 72 h) significantly increases the number of γH2AX foci and fluorescence intensity in MDA-MB-436 cells[1].
PP-048 (0.1 and 0.5 μM; 72 h) increases γH2AX protein levels in a dose-dependent manner[1].
PP-048 (up to 80 μM; 7 days) exhibits potent antiproliferative activity against HR-deficient MDA-MB-436 cells, with an IC50 of 0.07 μM; it shows moderate activity against BRCA2-knockout HCT116 cells, significantly reduced potency against HR-proficient MDA-MB-231 cells, and no obvious activity against non-malignant MCF-10A cells[1].
PP-048 (0.5 μM; 9 days) almost completely inhibits the clonogenic survival of MDA-MB-436 BRCA1-deficient cells after 9 days of incubation[1].
PP-048 (0.5 μM; 72 h) induces significant apoptosis in MDA-MB-436 BRCA1-deficient cells after 3 days of incubation, and its effect is superior to that of two single-target reference inhibitors at their respective tested concentrations[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Cell Line:MDA-MB-436
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Concentration:0.5 μM
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Incubation Time:9 days
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Result:Almost completely suppressed colony formation.
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Cell Line:MDA-MB-436
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Concentration:0.5 μM
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Incubation Time:72 h
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Result:Induced a higher level of apoptosis in MDA-MB-436 cells than treatment with reference compounds.
Increased the total apoptotic population to 22% following exposure.
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Cell Line:MDA-MB-436
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Concentration:0.1, 0.5 μM
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Incubation Time:72 h
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Result:Dose-dependently increased γH2AX protein levels.
Parmacokinetics
In Vivo
PP-048 (1-10 mg/kg; intravenous injection; oral administration; single dose) exhibits significantly improved in vivo pharmacokinetic properties in healthy Sprague-Dawley rats, with an oral bioavailability of up to 12.7%[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:BALB/c nude mice (Five-week-old female, 18-20 g)[1]
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Dosage:10 mg/kg
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Administration:i.v.; once daily; 21 consecutive days
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Result:Achieved 91.3% TGI.
Produced greater tumor growth inhibition than AB25583 alone (TGI 11%).
Produced greater tumor growth inhibition than AZD5305 alone (TGI 75.2%).
Produced greater tumor growth inhibition than the AB25583 + AZD5305 group (TGI 81.2%).
Maintained stable body-weight changes during administration.
Showed no discernible histopathological toxicity in the heart, liver, spleen, lungs, or kidneys.
Markedly increased γH2AX expression in harvested tumor tissues.
Produced stronger tumor γH2AX staining than AB25583, AZD5305, or their combined administration.
Did not produce obvious reductions in terminal platelet counts.
Did not produce obvious reductions in terminal red blood cell counts.
Chemical Information
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Molecular Weight 733.24
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Formula C37H33ClN10O3S
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SMILES
CCC1=CC2=C(NC1=O)C=C(C=N2)CN3CCN(CC3)C4=CN=C(C=C4)C#CC5=NN=C(S5)NC(C6=C(C=C(N=C6)C)C7=CC(Cl)=NC=C7OC)=O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)