RIGI - RNA sensor RIG-I Gene
Also Known as RIG1; DDX58; RIG-I; RLR-1; SGMRT2
Species: Homo sapiens
About RIGI
This gene has 10 transcripts (splice variants), 171 orthologues, 2 paralogues and is associated with 4 phenotypes. Ubiquitous expression in appendix (RPKM 7.8), spleen (RPKM 7.4) and 25 other tissues.
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases which are implicated in a number of cellular processes involving RNA binding and alteration of RNA secondary structure. This gene encodes a protein containing RNA helicase-DEAD box protein motifs and a Caspase recruitment domain (CARD). It is involved in viral double-stranded (ds) RNA recognition and the regulation of the Antiviral innate immune response. Mutations in this gene are associated with Singleton-Merten syndrome 2. [provided by RefSeq, Aug 2020]
RIGI Products (7)
| mRNA | Protein | Name |
|---|---|---|
| NM_001385907.1 | NP_001372836.1 | antiviral innate immune response receptor RIG-I isoform 2 |
| NM_001385909.1 | NP_001372838.1 | antiviral innate immune response receptor RIG-I isoform 3 |
| NM_001385910.1 | NP_001372839.1 | antiviral innate immune response receptor RIG-I isoform 4 |
| NM_001385912.1 | NP_001372841.1 | antiviral innate immune response receptor RIG-I isoform 5 |
| NM_001385913.1 | NP_001372842.1 | antiviral innate immune response receptor RIG-I isoform 6 |
| NM_001385914.1 | NP_001372843.1 | antiviral innate immune response receptor RIG-I isoform 7 |
| NM_014314.4 | NP_055129.2 | antiviral innate immune response receptor RIG-I isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables ATP hydrolysis activity |
IMP
IMP: Inferred from mutant phenotype
|
19211564 | GOA |
| enables GTP binding |
IMP
IMP: Inferred from mutant phenotype
|
21233210 | GOA |
| enables RNA helicase activity |
IMP
IMP: Inferred from mutant phenotype
|
19211564 | GOA |
| enables double-stranded RNA binding |
IDA
IDA: Inferred from direct assay
|
19576794 | GOA |
| enables double-stranded RNA binding |
IMP
IMP: Inferred from mutant phenotype
|
19211564 | GOA |
| enables identical protein binding |
IPI
IPI: Inferred from physical interaction
|
17190814 | GOA |
| enables pattern recognition receptor activity |
IDA
IDA: Inferred from direct assay
|
19576794 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
16127453 | GOA |
| enables single-stranded RNA binding |
IMP
IMP: Inferred from mutant phenotype
|
19211564 | GOA |
| enables ubiquitin protein ligase binding |
IPI
IPI: Inferred from physical interaction
|
23950712 | GOA |
| enables zinc ion binding |
IDA
IDA: Inferred from direct assay
|
18243112 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in actin cytoskeleton |
IDA
IDA: Inferred from direct assay
|
19122199 | GOA |
| located in bicellular tight junction |
IDA
IDA: Inferred from direct assay
|
19122199 | GOA |
| is active in cytoplasm |
IDA
IDA: Inferred from direct assay
|
15208624 | GOA |
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
21102435 | GOA |
| part of ribonucleoprotein complex |
IDA
IDA: Inferred from direct assay
|
31006531 | GOA |
| located in ruffle membrane |
IDA
IDA: Inferred from direct assay
|
19122199 | GOA |
RIGI Protein Structure
DEAD: DEAD/DEAH box helicase (247 - 416)
Helicase_C: Helicase conserved C-terminal domain (672 - 733)
RIG-I_C-RD: C-terminal domain of RIG-I (804 - 924)
- 0
- 200
- 400
- 600
- 800
- 925 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
antiviral innate immune response receptor RIG-I |
|
RIGI Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
RIGI | O95786 | STAT1 | Homo sapiens | P42224 | 24360797 | |
|
Intra
|
RIGI | O95786 | NPLOC4 | Homo sapiens | Q8TAT6 | 26471729 | |
|
Intra
|
RIGI | O95786 | NPLOC4 | Homo sapiens | Q8TAT6 | 26471729 | |
|
Intra
|
RIGI | O95786 | NPLOC4 | Homo sapiens | Q8TAT6 | 26471729 | |
|
Intra
|
RIGI | O95786 | CYLD | Homo sapiens | Q9NQC7 | 18636086 | |
|
Intra
|
RIGI | O95786 | RNF125 | Homo sapiens | Q96EQ8 | 26471729 | |
|
Intra
|
RIGI | O95786 | TRIM25 | Homo sapiens | Q14258 | 34471099 | |
|
Intra
|
RIGI | O95786 | TRIM25 | Homo sapiens | Q14258 | 35075101 | |
|
Intra
|
RIGI | O95786 | TRIM25 | Homo sapiens | Q14258 | 20818395 | |
|
Intra
|
RIGI | O95786 | WRNIP1 | Homo sapiens | Q96S55 | 21903422 | |
|
Cross
|
RIGI | O95786 | N | SARS-CoV-2 | P0DTC9 | 33396605 | |
|
Cross
|
RIGI | O95786 | N | SARS-CoV-2 | P0DTC9 | 35075101 | |
|
Cross
|
RIGI | O95786 | N | SARS-CoV-2 | P0DTC9 | 34471099 | |
|
Cross
|
RIGI | O95786 | N | SARS-CoV-2 | P0DTC9 | 35075101 | |
|
Cross
|
RIGI | O95786 | N | SARS-CoV-2 | P0DTC9 | 33396605 | |
|
Cross
|
RIGI | O95786 | P0DTD1-PRO_0000449623 | SARS-CoV-2 | P0DTD1-PRO_0000449623 | 35075101 | |
|
Cross
|
RIGI | O95786 | P0DTD1-PRO_0000449623 | SARS-CoV-2 | P0DTD1-PRO_0000449623 | 34544279 | |
|
Cross
|
RIGI | O95786 | P0DTD1-PRO_0000449623 | SARS-CoV-2 | P0DTD1-PRO_0000449623 | 35075101 | |
|
Cross
|
RIGI | O95786 | Z | Junin mammarenavirus | Q6IVU5 | 20007272 | |
|
Cross
|
RIGI | O95786 | Z | Junin mammarenavirus | Q6IVU5 | 20007272 | |
|
Cross
|
RIGI | O95786 | Z | Machupo virus | Q6IUF9 | 20007272 | |
|
Cross
|
RIGI | O95786 | 1B | Human respiratory syncytial virus A | P04543 | 19193793 | |
|
Intra
|
RIGI | O95786 | PRKRA | Homo sapiens | O75569 | 23870315 | |
|
Intra
|
RIGI | O95786 | NOP53 | Homo sapiens | Q9NZM5 | 27824081 | |
|
Intra
|
RIGI | O95786 | ZC3HAV1 | Homo sapiens | Q7Z2W4 | 21102435 | |
|
Intra
|
RIGI | O95786 | ZC3HAV1 | Homo sapiens | Q7Z2W4 | 21102435 | |
|
Intra
|
RIGI | O95786 | ZC3HAV1 | Homo sapiens | Q7Z2W4-2 | 21102435 | |
|
Intra
|
RIGI | O95786 | ZC3HAV1 | Homo sapiens | Q7Z2W4-2 | 21102435 | |
|
Intra
|
RIGI | O95786 | ZC3HAV1 | Homo sapiens | Q7Z2W4-2 | 21102435 | |
|
Cross
|
RIGI | O95786 | NSS | sfts virus hb29 | A0A0B5AC19 | 24478431 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 20007272 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 21903422 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 19193793 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 19164550 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 22301138 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 34544279 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 35075101 | |
|
Intra
|
RIGI | O95786 | MAVS | Homo sapiens | Q7Z434 | 16177806 | |
|
Cross
|
RIGI | O95786 | Casp12 | Rattus norvegicus | Q920D5 | 20818395 | |
|
Cross
|
RIGI | O95786 | Casp12 | Rattus norvegicus | Q920D5 | 20818395 | |
|
Cross
|
RIGI | O95786 | Z | Guanarito mammarenavirus | Q6UY71 | 20007272 | |
|
Cross
|
RIGI | O95786 | Z | Guanarito mammarenavirus | Q6UY71 | 20007272 | |
|
Cross
|
RIGI | O95786 | Z | Sabia mammarenavirus | Q6UY62 | 20007272 | |
|
Cross
|
RIGI | O95786 | US11 | Human herpesvirus 1 | P04487 | 22301138 |
Recombinant RIGI Proteins
| Cat. No. | Product Name | Accession | Purity |
|---|---|---|---|
| HY-P72170 | DDX58 Protein, Human (His) | O95786 (M1-L430) | ≥ 90%, as determined by reducing SDS-PAGE. |
RIGI Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P82573 | DDX58 Antibody (YA2318) | WB, IP | Human |
| HY-P83877 | DDX58 Antibody (YA3574) | ICC/IF, FC, ELISA | Human |
| HY-P83877A | DDX58 Antibody (YA3574)(PBS only) | ICC/IF, FC, ELISA | Human |
| HY-P86185 | DDX58 Antibody (YA5877) | WB, IHC-P, ICC/IF, IP, ELISA | Human, Mouse |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Singleton-Merten Syndrome 2 |
|
|
| Singleton-Merten Syndrome |
|
|
| Measles |
|
|
| Stomatitis |
|
|
| Influenza |
|
|
| Hand, Foot And Mouth Disease |
|
|
| Viral Infectious Disease |
|
|
| Yellow Fever |
|
|
| Plague |
|
|
| Hepatitis |
|
|
| Hepatitis C |
|
|
| Newcastle Disease |
|
|
| Encephalitis |
|
|
| Dengue Virus |
|
|
| West Nile Virus |
|
|
| Herpes Simplex |
|
|
| Mouth Disease |
|
|
| Avian Influenza |
|
|
| Japanese Encephalitis |
|
|
| Rabies |
|
|
| Lymphocytic Choriomeningitis |
|
|
| Severe Acute Respiratory Syndrome |
|
|
| Rubella |
|
|
| Chikungunya |
|
|
| Hepatitis B |
|
|
| Hepatitis C Virus |
|
|
| Hepatitis E |
|
|
| Microphthalmia With Limb Anomalies |
|
|
| Psoriasis |
|
|
| Lassa Fever |
|
|
| Trichohepatoenteric Syndrome 1 |
|
|
| Swine Influenza |
|
|
| Argentine Hemorrhagic Fever |
|
|
| Herpangina |
|
|
| Aicardi-Goutieres Syndrome |
|
|
| Bolivian Hemorrhagic Fever |
|
|
| Ebola Hemorrhagic Fever |
|
|
| Zika Fever |
|
|
| West Nile Encephalitis |
|
|
| Hantavirus Pulmonary Syndrome |
|
|
| Chilblain Lupus 1 |
|
|
| Diarrhea |
|
|
| Poliomyelitis |
|
|
| Sting-Associated Vasculopathy With Onset In Infancy |
|
|
| Melanoma |
|
|
| Viral Encephalitis |
|
|
| Croup |
|
|
| Dengue Shock Syndrome |
|
|
| Dengue Hemorrhagic Fever |
|
|
| Legionellosis |
|
|
| Dengue Disease |
|
|
| West Nile Fever |
|
|
| Hantavirus Hemorrhagic Fever With Renal Syndrome |
|
|
| Coronavirus Infectious Disease |
|
|
| Thrombocytopenia |
|
|
| Vasculopathy, Retinal, With Cerebral Leukoencephalopathy And Systemic Manifestations |
|
|
| Atrial Septal Defect 8 |
|
|
| Congenital Nervous System Abnormality |
|
|
| Nervous System Disease |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | RIGI | VGNC | VGNC:71672 |
| Felis catus | RIGI | VGNC | VGNC:61418 |
| Mus musculus | RIGI | MGD | MGI:2442858 |
| Canis familiaris | RIGI | VGNC | VGNC:39867 |
| Rattus norvegicus | RIGI | RGD | RGD:1309460 |
| Bos taurus | RIGI | VGNC | VGNC:27979 |
| Others | RIGI | NCBI |