CDK9/CycT1 degrader-1
CDK9/CycT1 degrader-1 is an autophagy-anchored bifunctional degrader that mediates the degradation of the CDK9/cyclin T1 protein complex. CDK9/CycT1 degrader-1 binds both CDK9 and LC3B simultaneously to form a ternary complex, achieving target protein degradation via the autophagy-lysosome pathway. CDK9/CycT1 degrader-1 downregulates the protein levels of Mcl‑1 and c‑Myc and induces apoptosis. PROTAC CDK9/CycT1 Degrader-2 is applicable to cancer-related research.
For research use only. We do not sell to patients.
- CAS No.: 3020773-91-2
- Formula: C30H36N4O6S2
- Molecular Weight:612.76
-
Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
IC50 & Target
[1]|
CDK9 |
Mcl-1 |
Cellular Effect
|
Cell Line
|
Type | Value | Description | References |
|---|---|---|---|---|
| U2932 | IC50 |
45 nM
|
Antiproliferative activity against human U-2932 cells assessed as reduction in cell viability incubated for 72 hrs by CCK8 assay.
Antiproliferative activity against human U-2932 cells assessed as reduction in cell viability incubated for 72 hrs by CCK8 assay.
|
37671907 |
In Vitro
CDK9/CycT1 degrader-1 (compound 16) inhibits purified CDK9/cycT1 enzyme, with an inhibition rate of 19% at 10 nM and 74% at 100 nM; it also inhibits the proliferation of U-2932 cells, with an IC50 of 45 nM[1].
CDK9/CycT1 degrader-1 (1-1000 nM; 1-24 h) induces dose- and time-dependent degradation of CDK9, and downregulates cyclin T1 and Mcl-1 in U-2932 cells[1].
CDK9/CycT1 degrader-1 (100 nM; 24 h) selectively degrades CDK9 (along with CDK1) in U-2932 cells, while exerting minimal effects on CDK2, CDK4 and CDK7[1].
CDK9/CycT1 degrader-1 (10-1000 nM; 6 h) dose-dependently downregulates pSer2-RNAP2 (with no effect on pSer5-RNAP2) in U-2932 cells[1].
CDK9/CycT1 degrader-1 (10-1000 nM; 6 h) downregulates the mRNA expression of Mcl-1 and c-Myc in a dose-dependent manner in U-2932 cells[1].
CDK9/CycT1 degrader-1 (10-1000 nM; 24 h) induces apoptosis in U-2932 cells[1].
CDK9/CycT1 degrader-1 (500 nM; 12 h, with 2 h pretreatment of 500 nM Bafilomycin A1 or 10 μM Hydroxychloroquine) degrades CDK9 via the autophagy-lysosomal pathway, which is confirmed by the reversed degradation effect in U-2932 cells treated with the autophagy inhibitors Bafilomycin A1 (HY-100558) or Hydroxychloroquine (HY-W031727)[1].
CDK9/CycT1 degrader-1 (500 nM; 12 h, co-treated with 500 nM Bafilomycin A1) promotes the formation of a ternary complex between CDK9 and LC3B in U-2932 cells[1].
CDK9/CycT1 degrader-1 (100 nM; 24 h) mediates CDK9 degradation in an LC3B-dependent manner, as evidenced by the blocked degradation in LC3B-knockout 293T cells compared with wild-type cells[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
-
Cell Line:U-2932 cells
-
Concentration:100 nM (24 h assessment)
1 nM, 4 nM, 12 nM, 37 nM, 111 nM, 333 nM, 1000 nM (dose-dependent assessment)
100 nM (time-course assessment) -
Incubation Time:24 h (fixed time assessment)
1 h, 3 h, 6 h, 12 h, 24 h (time-course assessment) -
Result:Reduced CDK9 55 and CDK9 42 abundance to 0.70 and 0.41 versus DMSO control after 24 h 100 nM treatment.
Downregulated cyclin T1 and Mcl‑1.
Attained Dmax values of 49.89% (CDK9 42) and 46.02% (CDK9 55) in dose‑dependent assays.
Detected progressive CDK9 depletion commencing at 3 h and continuing to 24 h in time‑dependent assays.
-
Cell Line:U-2932 cells
-
Concentration:100 nM
-
Incubation Time:24 h
-
Result:Induced obvious degradation of CDK9.
Showed less effect on CDK2, CDK4, and CDK7.
Induced degradation of CDK1.
-
Cell Line:U-2932 cells
-
Concentration:10 nM, 100 nM, 1000 nM
-
Incubation Time:6 h
-
Result:Dose-dependently downregulated the level of pSer2-RNAP2.
Did not suppress pSer5-RNAP2.
-
Cell Line:U-2932 cells
-
Concentration:10 nM, 1000 nM
-
Incubation Time:6 h
-
Result:Decreased Mcl-1 and c-Myc mRNA levels in a dose-dependent manner.
Reduced Mcl-1 relative expression to near 0 at 1000 nM.
Reduced c-Myc relative expression to near 0 at 1000 nM.
-
Cell Line:U-2932 cells
-
Concentration:10 nM, 100 nM, 1000 nM
-
Incubation Time:24 h
-
Result:Strongly induced apoptosis at 100 nM and 1000 nM.
Achieved an apoptosis rate of 86.1% at 1000 nM.
-
Cell Line:wild-type 293T cells, LC3B-KO 293T cells
-
Concentration:100 nM
-
Incubation Time:24 h
-
Result:Induced degradation of CDK9 in wild-type 293T cells.
Blocked CDK9 degradation in LC3B-KO 293T cells.
Parmacokinetics
Chemical Information
-
CAS No. 3020773-91-2
-
Molecular Weight 612.76
-
Formula C30H36N4O6S2
-
SMILES
O=C1OC2=CC(OCCCN3CCC(CC3)C(NC4=NC=C(S4)SCC5=NC=C(O5)C(C)(C)C)=O)=CC(O)=C2C(C)=C1
-
Shipping
Room temperature in continental US; may vary elsewhere.
-
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)