HMGB1 - high mobility group box 1 Gene
Also Known as HMG1; HMG3; HMG-1; SBP-1
Species: Homo sapiens
About HMGB1
This gene has 8 transcripts (splice variants), 250 orthologues, 20 paralogues and is associated with 1 phenotype. Ubiquitous expression in bone marrow (RPKM 98.7), lymph node (RPKM 87.4) and 25 other tissues.
Summary
This gene encodes a protein that belongs to the High Mobility Group-box superfamily. The encoded non-histone, nuclear DNA-binding protein regulates transcription, and is involved in organization of DNA. This protein plays a role in several cellular processes, including inflammation, cell differentiation and tumor cell migration. Multiple pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants that encode the same protein. [provided by RefSeq, Sep 2015]
HMGB1 Products (7)
| mRNA | Protein | Name |
|---|---|---|
| NM_001313892.2 | NP_001300821.1 | high mobility group protein B1 isoform 1 |
| NM_001313893.1 | NP_001300822.1 | high mobility group protein B1 isoform 1 |
| NM_001363661.2 | NP_001350590.1 | high mobility group protein B1 isoform 2 |
| NM_001370339.1 | NP_001357268.1 | high mobility group protein B1 isoform 2 |
| NM_001370340.1 | NP_001357269.1 | high mobility group protein B1 isoform 1 |
| NM_001370341.1 | NP_001357270.1 | high mobility group protein B1 isoform 1 |
| NM_002128.7 | NP_002119.1 | high mobility group protein B1 isoform 1 |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of alphav-beta3 integrin-HMGB1 complex |
IDA
IDA: Inferred from direct assay
|
20826760 | GOA |
| located in cell surface |
IDA
IDA: Inferred from direct assay
|
19841752 | GOA |
| located in condensed chromosome |
IDA
IDA: Inferred from direct assay
|
12925773 | GOA |
| located in endoplasmic reticulum |
IDA
IDA: Inferred from direct assay
|
35239449 | GOA |
| is active in extracellular space |
IDA
IDA: Inferred from direct assay
|
25595774 | GOA |
| located in extracellular space |
IDA
IDA: Inferred from direct assay
|
19841752 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
8339930 | GOA |
| part of transcription repressor complex |
IDA
IDA: Inferred from direct assay
|
19158276 | GOA |
HMGB1 Protein Structure
HMG_box_2: HMG-box domain (6 - 78)
HMG_box: HMG (high mobility group) box (95 - 163)
- 0
- 100
- 200
- 215 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
high mobility group protein B1 |
|
HMGB1 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
HMGB1 | P09429 | AGER | Homo sapiens | Q15109 | 24474694 | |
|
Intra
|
HMGB1 | P09429 | KRT7 | Homo sapiens | P08729 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | KRT7 | Homo sapiens | P08729 | 29721183 | |
|
Intra
|
HMGB1 | P09429 | KRT7 | Homo sapiens | P08729 | 32867128 | |
|
Intra
|
HMGB1 | P09429 | KRT7 | Homo sapiens | P08729 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | KRT7 | Homo sapiens | P08729 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | HNRNPU | Homo sapiens | Q00839 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | HNRNPU | Homo sapiens | Q00839 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | HNRNPU | Homo sapiens | Q00839 | 29721183 | |
|
Intra
|
HMGB1 | P09429 | PARP1 | Homo sapiens | P09874 | 29721183 | |
|
Intra
|
HMGB1 | P09429 | MSH2 | Homo sapiens | P43246 | 15014079 | |
|
Intra
|
HMGB1 | P09429 | TP53 | Homo sapiens | P04637 | 23063560 | |
|
Intra
|
HMGB1 | P09429 | TP53 | Homo sapiens | P04637 | 23063560 | |
|
Intra
|
HMGB1 | P09429 | TP53 | Homo sapiens | P04637 | 9472015 | |
|
Intra
|
HMGB1 | P09429 | TP53 | Homo sapiens | P04637 | 23063560 | |
|
Intra
|
HMGB1 | P09429 | TP53 | Homo sapiens | P04637 | 23063560 | |
|
Intra
|
HMGB1 | P09429 | SRSF3 | Homo sapiens | P84103 | 29721183 | |
|
Intra
|
HMGB1 | P09429 | SRSF3 | Homo sapiens | P84103 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | SRSF3 | Homo sapiens | P84103 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | HTT | Homo sapiens | P42858 | 23303669 | |
|
Intra
|
HMGB1 | P09429 | HTT | Homo sapiens | P42858 | 23303669 | |
|
Intra
|
HMGB1 | P09429 | HTT | Homo sapiens | P42858 | 23303669 | |
|
Intra
|
HMGB1 | P09429 | CCNDBP1 | Homo sapiens | O95273 | 32296183 | |
|
Intra
|
HMGB1 | P09429 | CCNDBP1 | Homo sapiens | O95273 | 32296183 | |
|
Intra
|
HMGB1 | P09429 | RSF1 | Homo sapiens | Q96T23 | 32867128 | |
|
Intra
|
HMGB1 | P09429 | RSF1 | Homo sapiens | Q96T23 | 29721183 | |
|
Intra
|
HMGB1 | P09429 | RSF1 | Homo sapiens | Q96T23 | 31694235 | |
|
Intra
|
HMGB1 | P09429 | BECN1 | Homo sapiens | Q14457 | 20819940 | |
|
Intra
|
HMGB1 | P09429 | ZNF428 | Homo sapiens | Q96B54 | 31694235 |
Recombinant HMGB1 Proteins
| Cat. No. | Product Name | Accession | Purity |
|---|---|---|---|
| HY-P70274 | HMGB1/HMG-1 Protein, Human (HEK293, His, solution) | P09429 (G2-E215) | ≥ 95%, as determined by reducing SDS-PAGE. |
| HY-P70570 | HMGB1/HMG-1 Protein, Human | P09429 (M1-F89) | ≥ 90%, as determined by reducing SDS-PAGE. |
| HY-P72797 | HMGB1/HMG-1 Protein, Human (His) | P09429 (M1-E215) | ≥ 95%, as determined by reducing SDS-PAGE. |
| HY-P73103 | HMGB1/HMG-1 Protein, Human (102a.a, His) | P09429 (K57-D158) | ≥ 95%, as determined by reducing SDS-PAGE. |
| HY-P73102 | HMGB1/HMG-1 Protein, Human (HEK293, Fc) | P09429/NP_002119.1 (M1-E215) | ≥ 90%, as determined by reducing SDS-PAGE. |
| HY-P78139 | HMGB1/HMG-1 Protein, Human (Biotinylated, HEK293, His) | P09429 (M1-E215) | ≥ 95%, as determined by Bis-Tris PAGE. |
| HY-P72797AF | Animal-Free HMGB1/HMG-1 Protein, Human (His) | P09429 (M1-E215) | ≥ 95%, as determined by reducing SDS-PAGE. |
HMGB1 Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P80183 | HMGB1 Antibody (YA361) | WB, ICC/IF, IHC-P, FC | Human, Mouse, Rat |
| HY-P85867 | HMGB1 Antibody (YA5559) | WB, ICC/IF, ELISA | Human, Mouse, Rat |
| HY-P86393 | HMGB1 Antibody (YA6085) | WB, IHC-P, ICC/IF, IP, ELISA | Human, Mouse, Rat |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Endophthalmitis |
|
|
| Borna Disease |
|
|
| Chronic Kidney Disease |
|
|
| Arthritis |
|
|
| Lupus Erythematosus |
|
|
| Rheumatoid Arthritis |
|
|
| Malignant Pleural Mesothelioma |
|
|
| Synovitis |
|
|
| Granulomatosis With Polyangiitis |
|
|
| Disseminated Intravascular Coagulation |
|
|
| Chorioamnionitis |
|
|
| Cardiac Arrest |
|
|
| Churg-Strauss Syndrome |
|
|
| Autoimmune Hepatitis |
|
|
| Mouth Disease |
|
|
| Pneumonia |
|
|
| Juvenile Rheumatoid Arthritis |
|
|
| Kidney Disease |
|
|
| Pituitary Apoplexy |
|
|
| Silicosis |
|
|
| Systemic Lupus Erythematosus |
|
|
| Retinoblastoma |
|
|
| Melioidosis |
|
|
| Appendicitis |
|
|
| Mucositis |
|
|
| Enterocolitis |
|
|
| Peritonitis |
|
|
| Thrombophilia |
|
|
| Toxic Shock Syndrome |
|
|
| Adult Respiratory Distress Syndrome |
|
|
| Colorectal Cancer |
|
|
| Post-Cardiac Arrest Syndrome |
|
|
| Retinal Detachment |
|
|
| Pulmonary Hypertension |
|
|
| Deafness, Autosomal Recessive 74 |
|
|
| Bacterial Sepsis |
|
|
| Cardiomyopathy, Familial Hypertrophic, 6 |
|
|
| Lung Cancer |
|
|
| Pancreatic Cancer |
|
|
| Heart Disease |
|
|
| Stroke, Ischemic |
|
|
| Disease By Infectious Agent |
|
|
| Myocardial Infarction |
|
|
| Gastric Cancer |
|
|
| Abacavir Allergy |
|
|
| Ovarian Cancer |
|
|
| Cystic Fibrosis |
|
|
| Preterm Premature Rupture Of The Membranes |
|
|
| Diabetes Mellitus |
|
|
| Prostate Cancer |
|
|
| Breast Cancer |
|
|
| Melanoma, Uveal |
|
|
| Lipoprotein Quantitative Trait Locus |
|
|
| Purulent Acute Otitis Media |
|
|
| Intracranial Berry Aneurysm |
|
|
| Immune Deficiency Disease |
|
|
| Hypertension, Essential |
|
|
| Microcephaly |
|
|
| Interstitial Lung Disease 2 |
|
|
| Nervous System Disease |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Bos taurus | HMGB1 | VGNC | VGNC:53816 |
| Canis familiaris | HMGB1 | VGNC | VGNC:59082 |
| Rattus norvegicus | HMGB1 | RGD | RGD:2802 |
| Mus musculus | HMGB1 | MGD | MGI:96113 |