HDAC2 - histone deacetylase 2 Gene

Also Known as HD2; RPD3; YAF1; KDAC2

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 3066

About HDAC2

Cytogenetic location: 6q21 Genomic coordinates (GRCh38): 6:113,933,028-113,971,148 (from NCBI)

This gene has 17 transcripts (splice variants), 205 orthologues and 10 paralogues. Ubiquitous expression in testis (RPKM 14.8), endometrium (RPKM 10.6) and 25 other tissues.

Summary

This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. Thus, it plays an important role in transcriptional regulation, cell cycle progression and developmental events. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2010]

HDAC2 Products (4)

mRNA Protein Name
NR_033441.2
NR_073443.2
NM_001527.4 NP_001518.3 histone deacetylase 2
XM_047418692.1 XP_047274648.1 histone deacetylase 2 isoform X1
Molecular Function GO Annotation Evidence References Source
enables NF-kappaB binding IPI
IPI: Inferred from physical interaction
17785205 GOA
enables RNA polymerase II-specific DNA-binding transcription factor binding IPI
IPI: Inferred from physical interaction
17827154 GOA
enables enzyme binding IPI
IPI: Inferred from physical interaction
11062478 GOA
enables histone binding IDA
IDA: Inferred from direct assay
19276356 GOA
enables histone deacetylase activity IDA
IDA: Inferred from direct assay
16642021 GOA
enables histone deacetylase binding IPI
IPI: Inferred from physical interaction
28046085 GOA
enables histone decrotonylase activity IDA
IDA: Inferred from direct assay
28497810 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
9150135 GOA
enables protein de-2-hydroxyisobutyrylase activity IDA
IDA: Inferred from direct assay
29192674 GOA
enables protein lysine deacetylase activity IMP
IMP: Inferred from mutant phenotype
19041327 GOA
Biological Process GO Annotation Evidence References Source
involved in chromatin remodeling IDA
IDA: Inferred from direct assay
9790534 GOA
involved in heterochromatin formation IMP
IMP: Inferred from mutant phenotype
19372552 GOA
involved in negative regulation of DNA-binding transcription factor activity IMP
IMP: Inferred from mutant phenotype
19041327 GOA
involved in negative regulation of transcription by RNA polymerase II IMP
IMP: Inferred from mutant phenotype
19041327 GOA
involved in negative regulation of transcription by competitive promoter binding IMP
IMP: Inferred from mutant phenotype
19276356 GOA
involved in positive regulation of cell population proliferation IMP
IMP: Inferred from mutant phenotype
18347167 GOA
involved in positive regulation of proteolysis IMP
IMP: Inferred from mutant phenotype
19041327 GOA
acts upstream of positive regulation of signaling receptor activity IMP
IMP: Inferred from mutant phenotype
18316616 GOA
involved in positive regulation of transcription by RNA polymerase II IMP
IMP: Inferred from mutant phenotype
19041327 GOA
Cellular Component GO Annotation Evidence References Source
part of ESC/E(Z) complex IDA
IDA: Inferred from direct assay
20075857 GOA
part of NuRD complex IDA
IDA: Inferred from direct assay
17827154 GOA
part of Sin3-type complex IDA
IDA: Inferred from direct assay
14966270 GOA
located in chromosome, telomeric region IDA
IDA: Inferred from direct assay
25150861 GOA
located in cytoplasm IDA
IDA: Inferred from direct assay
24970816 GOA
part of histone deacetylase complex IDA
IDA: Inferred from direct assay
9651585 GOA
located in nucleus IDA
IDA: Inferred from direct assay
18347167 GOA
part of protein-containing complex IDA
IDA: Inferred from direct assay
28046085 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

HDAC2 Protein Structure

Hist_deacetyl

Hist_deacetyl: Histone deacetylase domain (26 - 319)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 488 a.a.
Protein Preferred Names Protein Names

histone deacetylase 2

  • YY1-associated factor 1

  • protein deacylase HDAC2

  • transcriptional regulator homolog RPD3

HDAC2 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Cross
HDAC2 Q92769 P0DTD1-PRO_0000449623 SARS-CoV-2 P0DTD1-PRO_0000449623 33060197
Intra
HDAC2 Q92769 ZNF516 Homo sapiens Q92618 35271311
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 23752268
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 26949739
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 21258344
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 22416134
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 35271311
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547 9150135
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3 26949739
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3 21258344
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3 35271311
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3 16254079
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3 23752268
Intra
HDAC2 Q92769 CSNK2A1 Homo sapiens P68400 35271311
Intra
HDAC2 Q92769 SUV39H1 Homo sapiens O43463 12711603
Intra
HDAC2 Q92769 MYC Homo sapiens P01106 20195357
Intra
HDAC2 Q92769 BCL11B Homo sapiens Q9C0K0 17245431
Intra
HDAC2 Q92769 BCL11B Homo sapiens Q9C0K0 23752268
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330 23752268
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330 21258344
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330 26949739
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330 35271311
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330 20651739
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9 21258344
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9 16919237
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9 23752268
Intra
HDAC2 Q92769 SRA1 Homo sapiens Q9HD15 20398657
Intra
HDAC2 Q92769 DAXX Homo sapiens Q9UER7 12140263
Intra
HDAC2 Q92769 MBD1 Homo sapiens Q9UIS9 12711603
Cross
HDAC2 Q92769 K8 Human herpesvirus 8 Q2HR82 22416134
Intra
HDAC2 Q92769 RFX5 Homo sapiens P48382 16464847
Intra
HDAC2 Q92769 RFX5 Homo sapiens P48382 16464847
Cross: Cross-species interaction Intra: Intraspecies interaction

HDAC2 Antibodies

Cat. No. Product Name Application Reactivity
HY-P80151 HDAC2 Antibody (YA393) WB, ICC/IF, IHC-P, IP, FC Human, Mouse, Rat
HY-P80699 HDAC2 Antibody (YA742) WB, ICC/IF Human, Mouse, Rat, Monkey
HY-P80699A HDAC2 Antibody (YA742)(PBS only) WB, ICC/IF Human, Mouse, Rat, Monkey
HY-P86612 HDAC2 Antibody (YA6304) WB, IHC-P, ICC/IF, IP, ELISA Human, Mouse, Rat

Related Diseases

Diseases Alias
Asthma
  • Chronic Obstructive Asthma

  • Asthma, Diminished Response To Antileukotriene Treatment In

  • Bronchial Hyperreactivity

  • Asthma, Susceptibility To

  • Asthma, Bronchial

  • Asthma, Protection Against

  • Asthma, Nocturnal, Susceptibility To

  • Nocturnal Asthma

  • Asthma-Related Traits

  • Asthma-Related Traits, Susceptibility To

  • Asthma, Nocturnal

  • Chronic Obstructive Asthma With Acute Exacerbation

  • Chronic Obstructive Asthma With Status Asthmaticus

  • Exercise Induced Asthma

  • Exercise-Induced Asthma

  • Bronchial Asthma

  • Asthma, Exercise-Induced

  • Idiosyncratic Asthma

  • Unspecified Asthma With Acute Exacerbation

  • Asthma, Unspecified, With Stated Status Asthmaticus

  • Status Asthmaticus Nos

  • Acute Severe Asthma

  • Acute Severe Bronchial Asthma

  • Status Asthma

  • Status Post Asthmaticus

Acute Promyelocytic Leukemia
  • Leukemia, Acute Promyelocytic

  • Acute Myeloblastic Leukemia Type 3

  • Aml M3

  • APL

  • Leukemia, Acute Promyelocytic, Somatic

  • Aml With T(15

  • 17)(Q22

  • Q12)

  • (Pml/Raralpha) And Variants

  • Apml

  • Acute Myeloblastic Leukemia 3

  • Acute Myeloid Leukemia With T(15

  • 17)(Q22

  • Q12)

  • (Pml/Raralpha) And Variants

  • Acute Myeloblastic Leukaemia Type 3

  • Acute Myeloid Leukaemia M3

  • Acute Myeloid Leukemia M3

  • Acute Promyelocytic Leukaemia

  • M3 Anll

  • Myeloid Leukemia, Acute, M3

  • Leukemia Promyelocytic Acute

  • Leukemia, Promyelocytic, Acute

  • Leukemia, Acute, Promyelocytic

Leukemia, Acute Myeloid
  • Acute Myeloid Leukemia

  • Leukemia, Acute Myelogenous

  • Acute Myelogenous Leukemia

  • AML

  • Leukemia, Acute Myeloid, Susceptibility To

  • Acute Myeloblastic Leukemia

  • Leukemia, Acute Myeloid, Reduced Survival In, Somatic

  • Acute Myeloid Leukaemia

  • Leukemia, Myelocytic, Acute

  • Therapy Related Acute Myeloid Leukemia And Myelodysplastic Syndrome

  • Secondary Aml

  • Acute Myelocytic Leukemia

  • Leukemia, Myeloid, Acute

  • Acute Myeloid Leukemia, Somatic

  • Leukemia, Acute Myeloid, Somatic

  • Myeloid Leukemia, Acute, M4/M4eo Subtype, Somatic

  • Acute Myeloblastic Leukaemia

  • Acute Myelogenous Leukaemia

  • Aml - Acute Myeloid Leukemia

  • Acute Myeloid Leukemia With Cebpa Somatic Mutations

  • Aml With Cebpa Somatic Mutations

  • Inherited Acute Myeloid Leukemia

  • Familial Aml

  • Inherited Aml

  • Pure Familial Aml

  • Pure Familial Acute Myeloid Leukemia

  • Secondary Acute Myeloid Leukemia

  • Therapy-Related Aml And Myelodysplastic Syndrome

  • Acute Myeloid Leukemia, Secondary

  • Acute Non-Lymphoblastic Leukemia

  • Acute Non-Lymphocytic Leukemia

  • Acute Biphenotypic Leukemia

  • Acute Undifferentiated Leukemia

  • Acute Myeloblastic Leukaemia With Multilineage Dysplasia

  • Acute Myeloid Leukaemia With Multilineage Dysplasia Without Mention Of Remission

  • Acute Myeloid Leukaemia With Myelodysplasia-Related Features

Chromosome 16p13.3 Deletion Syndrome, Proximal
  • Rubinstein-Taybi Syndrome

  • Broad Thumb-Hallux Syndrome

  • Chromosome 16p13.3 Deletion Syndrome

  • Rubinstein-Taybi Syndrome Due To 16p13.3 Microdeletion

  • Rubinstein Syndrome

  • Broad Thumbs-Halluces Syndrome

  • Rsts

  • Rubinstein-Taybi Deletion Syndrome

  • Rsts Deletion Syndrome

  • Proximal Chromosome 16p13.3 Deletion Syndrome

  • 16p13.3 Deletion Syndrome

  • Broad Thumbs And Great Toes, Characteristic Facies, And Mental Retardation

  • Rts

Pulmonary Disease, Chronic Obstructive
  • Chronic Obstructive Pulmonary Disease

  • COPD

  • Pulmonary Disease, Chronic Obstructive, Severe Early-Onset

  • Chronic Obstructive Lung Disease

  • Chronic Obstructive Airway Disease

  • Pulmonary Disease, Chronic Obstructive, Susceptibility To

  • Cold

  • Severe Early-Onset Chronic Obstructive Pulmonary Disease

  • Pulmonary Disease Chronic Obstructive

  • Pulmonary Disease, Obstructive, Chronic, Susceptibility To

  • Chronic Obstructive Pulmonary Disease Of Horses

  • Common Cold

  • Upper Respiratory Infections

  • Copd - [Chronic Obstructive Pulmonary Disease]

  • Coad - [Chronic Obstructive Airways Disease]

  • Cold - [Chronic Obstructive Lung Disease]

  • Chronic Airway Disease Nos

  • Chronic Airways Limitation, Unspecified

  • Chronic Obstructed Airway, Unspecified

  • Chronic Obstructive Airway Disease, Unspecified

  • Chronic Obstructive Airway, Unspecified

  • Obstructive Lung Disease Nos

  • Chronic Obstructive Lung Disease Nos

  • Chronic Obstructive Lung Nos

  • Obstructive Pulmonary Disease Nos

  • Exacerbation Copd Nos

  • Acute Exacerbation Copd

Muscular Dystrophy
  • Muscular Dystrophies

  • Congenital Md

  • Congenital Muscular Dystrophy

  • Cmd

  • Mdc

  • Dystrophy, Muscular

  • Gower'S Muscular Dystrophy

  • Progressive Musclular Dystrophy

  • Pseudohypertrophic Atrophy

  • Pseudohypertrophic Muscle Paralysis

  • Pseudohypertrophic Muscular Atrophy

  • Pseudohypertrophic Muscular Dystrophy

  • Pseudohypertrophic Paralysis

  • Pseudomuscular Hypertrophy

Primary Hyperoxaluria
  • Hyperoxaluria, Primary

  • Oxalosis

  • Hyperoxaluria

  • Primary Oxalosis

  • Congenital Oxaluria

  • D-Glycerate Dehydrogenase Deficiency

  • Glyceric Aciduria

  • Glycolic Aciduria

  • Hepatic Agt Deficiency

  • Oxaluria, Primary

  • Peroxisomal Alanine:Glyoxylate Aminotransferase Deficiency

  • Primary Oxaluria

  • Hyperoxaluria Primary

  • Primary Hyperoxaluria Type 2

  • Primary Hyperoxaluria, Type I

Optic Atrophy 10 With Or Without Ataxia, Mental Retardation, And Seizures
  • OPA10

  • Optic Atrophy 10 With Or Without Ataxia, Intellectual Disability, And Seizures

  • Optic Atrophy 10

  • Atrophy, Optic, Type 10, With/Without Ataxia, Mental Retardation, And Seizures

Prostate Cancer
  • Prostate Carcinoma

  • Prostate Cancer, Familial

  • Prostate Neoplasm

  • Prostate Cancer, Somatic

  • Prostate Cancer, Susceptibility To

  • Prostatic Cancer

  • Prostatic Neoplasms

  • Hereditary Prostate Cancer

  • Prostatic Neoplasm

  • Cancer Of Prostate

  • Carcinoma Of Prostate

  • Familial Prostate Cancer

  • Familial Prostate Carcinoma

  • Malignant Tumor Of Prostate

  • Malignant Neoplasm Of Prostate

  • Prostate Cancer, Familial, Susceptibility To

  • Malignant Tumor Of The Prostate

  • Ngp - New Growth Of Prostate

  • Tumor Of The Prostate

  • Prostate Cancer, Hereditary

  • Cancer Of The Prostate

  • Malignant Neoplasm Of The Prostate

  • Prostatic Carcinoma

  • PC

  • Prca

  • Cancer, Prostate

  • Malignant Prostatic Tumour

  • Malignant Tumour Of Prostate

  • Primary Prostate Cancer

  • Primary Malignant Neoplasm Of Prostate

  • Prostate Gland Cancer

Cystic Fibrosis
  • Mucoviscidosis

  • CF

  • Pseudomonas Aeruginosa, Susceptibility To Chronic Infection By, In Cystic Fibrosis

  • Pseudomonas Aeruginosa Chronic Infection By, In Cystic Fibrosis

  • Cystic Fibrosis Lung Disease, Modifier Of

  • Cystic Fibrosis Of Pancreas

  • Fibrocystic Disease Of Pancreas

  • Cf - [Cystic Fibrosis]

  • Cystic Fibrosis Nos

  • Fibrocystic Disease

  • Fibrocystic Disease Of The Pancreas

  • Mucoviscidosis Of Pancreas

  • Nonproliferative Fibrocystic Disease

  • Pancreatic Cystic Fibrosis

Colorectal Cancer
  • Colon Cancer

  • Colorectal Carcinoma

  • Colon Carcinoma

  • Colorectal Cancer, Susceptibility To

  • Carcinoma Of Colon

  • CRC

  • Colorectal Cancer With Chromosomal Instability, Somatic

  • Colon Cancer, Somatic

  • Colon Cancer, Susceptibility To

  • Colonic Neoplasms

  • Colorectal Neoplasms

  • Colorectal Cancer, Somatic

  • Colon Cancer, Advanced, Somatic

  • Colonic Carcinoma

  • Colorectal Carcinomas

  • Colon Cancers

  • Colorectal Cancers

  • Cancer, Colorectal, Somatic

  • Cancer, Colon

  • Cancer, Colorectal, Susceptibility To

  • Colorectal Neoplasm

  • Colonic Neoplasm

  • Malignant Tumor Of Colon

Hutchinson-Gilford Progeria Syndrome
  • Progeria

  • HGPS

  • Hutchinson-Gilford Syndrome

  • Hutchinson-Gilford Progeria

  • Hutchinson Gilford Syndrome

  • Hutchinson-Gilford Disease

  • Hutchinson Gilford Progeria Syndrome

  • Progeria Of Childhood

  • Hutchinson-Gilford-Progeria Syndrome

Lung Disease
  • Lung Diseases

  • Disorder Of Lung

  • Abnormality Of The Lung

Peripheral T-Cell Lymphoma
  • Lymphoma T-Cell Peripheral

Mature T-Cell And Nk-Cell Lymphoma
  • Mature T-Cell And Natural Killer Cell Lymphoma

  • Nk-T Cell Lymphoma

Rett Syndrome
  • Atypical Rett Syndrome

  • RTT

  • Rts

  • Autism, Dementia, Ataxia, And Loss Of Purposeful Hand Use

  • Rett Syndrome, Atypical

  • Rett Syndrome, Preserved Speech Variant

  • Rett'S Disorder

  • Rett Syndrome Variant

  • Rett Disorder

  • Cerebroatrophic Hyperammonemia

  • Rett Like Syndrome

  • Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use Syndrome

  • Rett'S Syndrome

  • Atypical Rtt

  • Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use

  • Rett Syndrome Preserved Speech Variant

  • Rett Syndrome Zappella Variant

  • Rett Syndrome, Zappella Variant

Nervous System Disease
  • Abnormality Of The Nervous System

  • Nervous System Diseases

  • Nervous System Disorder

Otopalatodigital Syndrome, Type I
  • Otopalatodigital Syndrome Type 1

  • Taybi Syndrome

  • OPD1

  • Opd Syndrome 1

  • Oto-Palato-Digital Syndrome Type 1

  • Opd I Syndrome

  • Oto-Palato-Digital Syndrome, Type I

  • Otopalatodigital Syndrome Type I

  • Opd Syndrome

  • Cranioorodigital Syndrome

  • Faciopalatoosseous Syndrome

  • Fpo

  • Opd Syndrome, Type 1

  • Otopalatodigital Syndrome 1

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Rattus norvegicus HDAC2 RGD RGD:619976
Canis familiaris HDAC2 VGNC VGNC:49101
Mus musculus HDAC2 MGD MGI:1097691
Bos taurus HDAC2 VGNC VGNC:50610
Felis catus HDAC2 VGNC VGNC:97454
Macaca mulatta HDAC2 VGNC VGNC:73358
Others HDAC2 NCBI