HDAC3 - histone deacetylase 3 Gene

Also Known as HD3; RPD3; KDAC3; RPD3-2

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 8841

About HDAC3

Cytogenetic location: 5q31.3 Genomic coordinates (GRCh38): 5:141,620,881-141,636,849 (from NCBI)

This gene has 16 transcripts (splice variants), 155 orthologues and 10 paralogues. Ubiquitous expression in lymph node (RPKM 21.1), adrenal (RPKM 20.9) and 25 other tissues.

Summary

Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene belongs to the histone deacetylase/acuc/apha family. It has histone deacetylase activity and represses transcription when tethered to a promoter. It may participate in the regulation of transcription through its binding with the zinc-finger transcription factor YY1. This protein can also down-regulate p53 function and thus modulate cell growth and Apoptosis. This gene is regarded as a potential tumor suppressor gene. [provided by RefSeq, Jul 2008]

HDAC3 Products (10)

mRNA Protein Name
NR_149169.2
NM_001355041.2 NP_001341970.1 histone deacetylase 3 isoform 4
NR_149167.2
NM_001355040.2 NP_001341969.1 histone deacetylase 3 isoform 3
NR_149166.2
NR_149164.2
NM_003883.4 NP_003874.2 histone deacetylase 3 isoform 2
NR_149168.2
NR_149165.2
NM_001355039.2 NP_001341968.1 histone deacetylase 3 isoform 1
Molecular Function GO Annotation Evidence References Source
enables NF-kappaB binding IPI
IPI: Inferred from physical interaction
17785205 GOA
enables chromatin binding IDA
IDA: Inferred from direct assay
16569215 GOA
enables cyclin binding IPI
IPI: Inferred from physical interaction
18417529 GOA
enables enzyme binding IPI
IPI: Inferred from physical interaction
11641274 GOA
enables histone deacetylase activity IDA
IDA: Inferred from direct assay
28497810 GOA
enables histone deacetylase activity IMP
IMP: Inferred from mutant phenotype
16924111 GOA
enables histone deacetylase binding IPI
IPI: Inferred from physical interaction
10869435 GOA
enables histone decrotonylase activity IDA
IDA: Inferred from direct assay
28497810 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
11006275 GOA
enables protein de-2-hydroxyisobutyrylase activity IDA
IDA: Inferred from direct assay
29192674 GOA
enables protein decrotonylase activity IDA
IDA: Inferred from direct assay
34608293 GOA
enables protein lysine deacetylase activity IDA
IDA: Inferred from direct assay
15653507 GOA
enables transcription corepressor activity IDA
IDA: Inferred from direct assay
16569215 GOA
enables transcription corepressor activity IMP
IMP: Inferred from mutant phenotype
12628926 GOA
enables transcription corepressor binding IPI
IPI: Inferred from physical interaction
10898795 GOA
Biological Process GO Annotation Evidence References Source
involved in DNA repair-dependent chromatin remodeling IDA
IDA: Inferred from direct assay
25301942 GOA
involved in cellular response to fluid shear stress IDA
IDA: Inferred from direct assay
25190803 GOA
involved in establishment of mitotic spindle orientation IDA
IDA: Inferred from direct assay
34608293 GOA
involved in negative regulation of DNA-templated transcription IMP
IMP: Inferred from mutant phenotype
16924111 GOA
involved in negative regulation of JNK cascade IMP
IMP: Inferred from mutant phenotype
11931768 GOA
NOT involved in negative regulation of myotube differentiation IMP
IMP: Inferred from mutant phenotype
10983972 GOA
involved in negative regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
16569215 GOA
involved in negative regulation of transcription by RNA polymerase II IMP
IMP: Inferred from mutant phenotype
12628926 GOA
involved in positive regulation of TOR signaling IMP
IMP: Inferred from mutant phenotype
25190803 GOA
involved in positive regulation of protein import into nucleus IDA
IDA: Inferred from direct assay
25190803 GOA
involved in positive regulation of protein phosphorylation IDA
IDA: Inferred from direct assay
25190803 GOA
involved in positive regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
25190803 GOA
involved in protein deacetylation IDA
IDA: Inferred from direct assay
21030595 GOA
involved in regulation of protein stability IDA
IDA: Inferred from direct assay
25190803 GOA
involved in spindle assembly IMP
IMP: Inferred from mutant phenotype
18326024 GOA
Cellular Component GO Annotation Evidence References Source
located in cytoplasm IDA
IDA: Inferred from direct assay
25190803 GOA
located in cytosol IDA
IDA: Inferred from direct assay
21030595 GOA
part of histone deacetylase complex IDA
IDA: Inferred from direct assay
18326024 GOA
located in mitotic spindle IDA
IDA: Inferred from direct assay
18326024 GOA
located in nucleus IDA
IDA: Inferred from direct assay
18326024 GOA
part of transcription repressor complex IDA
IDA: Inferred from direct assay
11804585 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

HDAC3 Protein Structure

Hist_deacetyl

Hist_deacetyl: Histone deacetylase domain (18 - 314)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 428 a.a.
Protein Preferred Names Protein Names

histone deacetylase 3

  • SMAP45

  • protein deacetylase HDAC3

  • protein deacylase HDAC3

HDAC3 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Intra
HDAC3 O15379 AKAP8 Homo sapiens O43823 16980585
Intra
HDAC3 O15379 AKAP8 Homo sapiens O43823 16980585
Intra
HDAC3 O15379 AKAP8 Homo sapiens O43823 16980585
Intra
HDAC3 O15379 SUZ12 Homo sapiens Q15022 23079660
Intra
HDAC3 O15379 NCOR1 Homo sapiens O75376 23752268
Intra
HDAC3 O15379 NCOR1 Homo sapiens O75376 35271311
Intra
HDAC3 O15379 NCOR1 Homo sapiens O75376 11013263
Intra
HDAC3 O15379 NCOR1 Homo sapiens O75376 16980585
Intra
HDAC3 O15379 NCOR1 Homo sapiens O75376 21258344
Cross
HDAC3 O15379 Ncor1 Mus musculus Q60974 16917504
Cross
HDAC3 O15379 Ncor1 Mus musculus Q60974 17956988
Intra
HDAC3 O15379 AKAP8L Homo sapiens Q9ULX6 16980585
Intra
HDAC3 O15379 AKAP8L Homo sapiens Q9ULX6 16980585
Intra
HDAC3 O15379 MYC Homo sapiens P01106 23079660
Intra
HDAC3 O15379 MYC Homo sapiens P01106 23079660
Intra
HDAC3 O15379 MAGEA2 Homo sapiens P43356 16847267
Intra
HDAC3 O15379 PGK1 Homo sapiens P00558 26356530
Intra
HDAC3 O15379 PGK1 Homo sapiens P00558 26356530
Intra
HDAC3 O15379 KDM1A Homo sapiens O60341 23752268
Intra
HDAC3 O15379 KDM1A Homo sapiens O60341 23752268
Intra
HDAC3 O15379 KDM1A Homo sapiens O60341 21258344
Intra
HDAC3 O15379 GPS2 Homo sapiens Q13227 23752268
Intra
HDAC3 O15379 GPS2 Homo sapiens Q13227 21258344
Intra
HDAC3 O15379 GPS2 Homo sapiens Q13227 35271311
Intra
HDAC3 O15379 GPS2 Homo sapiens Q13227 16980585
Intra
HDAC3 O15379 L3MBTL2 Homo sapiens Q969R5
IF
20385135
Intra
HDAC3 O15379 L3MBTL2 Homo sapiens Q969R5 20385135
Intra
HDAC3 O15379 APPL1 Homo sapiens Q9UKG1 23752268
Intra
HDAC3 O15379 APPL1 Homo sapiens Q9UKG1 23752268
Intra
HDAC3 O15379 NRIP1 Homo sapiens P48552
Y2H
17053781
Intra
HDAC3 O15379 NRIP1 Homo sapiens P48552 17053781
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 22230954
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 22230954
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 21624135
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 21258344
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 16980585
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 22230954
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618
GMS
22230954
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 23752268
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 35271311
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 16980585
Intra
HDAC3 O15379 NCOR2 Homo sapiens Q9Y618 16924111
Intra
HDAC3 O15379 MBD1 Homo sapiens Q9UIS9 16432238
Cross
HDAC3 O15379 ICP0 Human herpesvirus 1 P08393 15194749
Cross
HDAC3 O15379 ICP0 Human herpesvirus 1 P08393 15194749
Cross: Cross-species interaction Intra: Intraspecies interaction

HDAC3 Antibodies

Cat. No. Product Name Application Reactivity
HY-P80152 HDAC3 Antibody (YA392) WB, ICC/IF, IHC-P, IP Human, Mouse, Rat
HY-P85198 HDAC3 Antibody (YA4890) WB, ICC/IF, ELISA Human, Mouse
HY-P85198A HDAC3 Antibody (YA4890)(PBS only) WB, ICC/IF, ELISA Human, Mouse
HY-P85432 HDAC3 Antibody (YA5124) WB Human, Mouse, Rat, Dog, Pig, Rabbit
HY-P85562 HDAC3 Antibody (YA5254) WB Human, Mouse, Rat

Related Diseases

Diseases Alias
Optic Atrophy 10 With Or Without Ataxia, Mental Retardation, And Seizures
  • OPA10

  • Optic Atrophy 10 With Or Without Ataxia, Intellectual Disability, And Seizures

  • Optic Atrophy 10

  • Atrophy, Optic, Type 10, With/Without Ataxia, Mental Retardation, And Seizures

Retinoblastoma
  • RB

  • Trilateral Retinoblastoma

  • RB1

  • Retinoblastoma, Trilateral

  • Neuroblastoma Of Retina

  • Rb - Retinoblastoma

  • Eye Cancer, Retinoblastoma

  • Retinal Cancer

  • Retinal Tumor

  • Glioma, Retinal

  • Non-Hereditary Retinoblastoma

  • Childhood Cancer Retinoblastoma

  • Malignant Neoplasm Of Retina

  • Retinal Neoplasms

Rett Syndrome
  • Atypical Rett Syndrome

  • RTT

  • Rts

  • Autism, Dementia, Ataxia, And Loss Of Purposeful Hand Use

  • Rett Syndrome, Atypical

  • Rett Syndrome, Preserved Speech Variant

  • Rett'S Disorder

  • Rett Syndrome Variant

  • Rett Disorder

  • Cerebroatrophic Hyperammonemia

  • Rett Like Syndrome

  • Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use Syndrome

  • Rett'S Syndrome

  • Atypical Rtt

  • Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use

  • Rett Syndrome Preserved Speech Variant

  • Rett Syndrome Zappella Variant

  • Rett Syndrome, Zappella Variant

Acute Promyelocytic Leukemia
  • Leukemia, Acute Promyelocytic

  • Acute Myeloblastic Leukemia Type 3

  • Aml M3

  • APL

  • Leukemia, Acute Promyelocytic, Somatic

  • Aml With T(15

  • 17)(Q22

  • Q12)

  • (Pml/Raralpha) And Variants

  • Apml

  • Acute Myeloblastic Leukemia 3

  • Acute Myeloid Leukemia With T(15

  • 17)(Q22

  • Q12)

  • (Pml/Raralpha) And Variants

  • Acute Myeloblastic Leukaemia Type 3

  • Acute Myeloid Leukaemia M3

  • Acute Myeloid Leukemia M3

  • Acute Promyelocytic Leukaemia

  • M3 Anll

  • Myeloid Leukemia, Acute, M3

  • Leukemia Promyelocytic Acute

  • Leukemia, Promyelocytic, Acute

  • Leukemia, Acute, Promyelocytic

Burkitt Lymphoma
  • Burkitt'S Lymphoma

  • BL

  • Burkitt Lymphoma, Somatic

  • Burkitt Lymphoma/Leukaemia

  • Burkitt'S Tumor

  • Burkitt'S Tumor Or Lymphoma

  • Malignant Lymphoma, Burkitt'S Type

  • Small Non-Cleaved Cell Lymphoma, Burkitt'S Type

  • Small Non-Cleaved Cell Lymphoma

  • Burkitt Tumor

  • Burkitts Lymphoma

  • Lymphoma, Small Noncleaved-Cell

  • Burkitt Tumour

  • Diffuse Small Noncleaved Malignant Burkitt Lymphoma

  • Malignant Burkitt Lymphoma

  • “Burkitt-Like” Lymphoma

  • Undifferentiated Burkitt Lymphoma

  • Small Noncleaved Cell Burkitt Lymphoma

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Felis catus HDAC3 VGNC VGNC:67549
Canis familiaris HDAC3 VGNC VGNC:50628
Rattus norvegicus HDAC3 RGD RGD:619977
Mus musculus HDAC3 MGD MGI:1343091
Bos taurus HDAC3 VGNC VGNC:106764
Macaca mulatta HDAC3 VGNC VGNC:73359
Others HDAC3 NCBI